Strain Fitness in Shewanella oneidensis MR-1 around SO_A0137

Experiment: Cobalt chloride 0.055 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO_A0136 and SO_A0137 are separated by 342 nucleotidesSO_A0137 and SO_A0138 are separated by 140 nucleotides SO_A0135: SO_A0135 - no description, at 118,856 to 121,991 _A0135 SO_A0136: SO_A0136 - ISSod3, transposase (NCBI), at 120,598 to 121,812 _A0136 SO_A0137: SO_A0137 - no description, at 122,155 to 122,331 _A0137 SO_A0138: SO_A0138 - no description, at 122,472 to 124,957 _A0138 Position (kb) 122 123Strain fitness (log2 ratio) -2 -1 0 1 2 3at 121.937 kb on - strandat 121.978 kb on + strandat 121.978 kb on + strandat 121.978 kb on + strandat 121.986 kb on - strandat 121.986 kb on - strandat 121.986 kb on - strandat 121.986 kb on - strandat 121.993 kb on + strandat 122.001 kb on + strandat 122.002 kb on - strandat 122.014 kb on + strandat 122.014 kb on + strandat 122.014 kb on + strandat 122.109 kb on - strandat 122.127 kb on + strandat 122.136 kb on + strandat 122.136 kb on - strandat 122.136 kb on - strandat 122.147 kb on + strandat 122.147 kb on + strandat 122.167 kb on - strandat 122.261 kb on + strand, within SO_A0137at 122.423 kb on + strandat 122.431 kb on - strandat 122.431 kb on - strandat 122.431 kb on - strandat 122.441 kb on + strandat 122.455 kb on + strandat 122.455 kb on + strandat 122.504 kb on + strandat 122.504 kb on + strandat 122.540 kb on - strandat 122.630 kb on + strandat 122.672 kb on - strandat 122.699 kb on + strandat 122.785 kb on + strand, within SO_A0138at 122.809 kb on - strand, within SO_A0138at 122.826 kb on + strand, within SO_A0138at 122.834 kb on - strand, within SO_A0138at 122.858 kb on + strand, within SO_A0138at 122.867 kb on - strand, within SO_A0138at 122.902 kb on - strand, within SO_A0138at 122.992 kb on + strand, within SO_A0138at 123.003 kb on + strand, within SO_A0138at 123.028 kb on + strand, within SO_A0138at 123.041 kb on + strand, within SO_A0138at 123.049 kb on - strand, within SO_A0138at 123.107 kb on + strand, within SO_A0138at 123.138 kb on + strand, within SO_A0138at 123.138 kb on + strand, within SO_A0138at 123.138 kb on + strand, within SO_A0138at 123.138 kb on + strand, within SO_A0138at 123.146 kb on - strand, within SO_A0138at 123.187 kb on - strand, within SO_A0138at 123.196 kb on + strand, within SO_A0138at 123.196 kb on + strand, within SO_A0138at 123.204 kb on - strand, within SO_A0138at 123.204 kb on - strand, within SO_A0138at 123.220 kb on + strand, within SO_A0138at 123.220 kb on + strand, within SO_A0138at 123.244 kb on + strand, within SO_A0138at 123.252 kb on - strand, within SO_A0138at 123.252 kb on - strand, within SO_A0138at 123.284 kb on - strand, within SO_A0138at 123.302 kb on + strand, within SO_A0138at 123.310 kb on - strand, within SO_A0138at 123.310 kb on - strand, within SO_A0138

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.055 mM
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121,937 - -0.0
121,978 + +0.6
121,978 + +0.6
121,978 + +0.1
121,986 - -0.5
121,986 - -2.6
121,986 - +0.0
121,986 - -0.5
121,993 + +1.5
122,001 + -0.8
122,002 - -0.7
122,014 + +0.8
122,014 + -1.1
122,014 + +0.3
122,109 - +0.8
122,127 + -0.7
122,136 + -1.0
122,136 - -0.5
122,136 - -1.2
122,147 + +2.4
122,147 + +3.4
122,167 - +0.7
122,261 + SO_A0137 0.60 -1.7
122,423 + +1.5
122,431 - -2.4
122,431 - -1.5
122,431 - -0.6
122,441 + +0.8
122,455 + +3.2
122,455 + -0.7
122,504 + +2.1
122,504 + +0.0
122,540 - -2.0
122,630 + -0.4
122,672 - +0.3
122,699 + -2.2
122,785 + SO_A0138 0.13 +0.3
122,809 - SO_A0138 0.14 -1.3
122,826 + SO_A0138 0.14 -0.2
122,834 - SO_A0138 0.15 -0.8
122,858 + SO_A0138 0.16 +0.3
122,867 - SO_A0138 0.16 +0.5
122,902 - SO_A0138 0.17 -0.5
122,992 + SO_A0138 0.21 -1.3
123,003 + SO_A0138 0.21 +0.4
123,028 + SO_A0138 0.22 +0.4
123,041 + SO_A0138 0.23 -1.7
123,049 - SO_A0138 0.23 +1.8
123,107 + SO_A0138 0.26 -1.9
123,138 + SO_A0138 0.27 +2.0
123,138 + SO_A0138 0.27 -1.0
123,138 + SO_A0138 0.27 +0.5
123,138 + SO_A0138 0.27 -1.6
123,146 - SO_A0138 0.27 +0.3
123,187 - SO_A0138 0.29 -0.0
123,196 + SO_A0138 0.29 +1.1
123,196 + SO_A0138 0.29 -0.9
123,204 - SO_A0138 0.29 -1.1
123,204 - SO_A0138 0.29 +0.4
123,220 + SO_A0138 0.30 +0.5
123,220 + SO_A0138 0.30 -2.0
123,244 + SO_A0138 0.31 -1.2
123,252 - SO_A0138 0.31 -0.2
123,252 - SO_A0138 0.31 -0.4
123,284 - SO_A0138 0.33 -0.5
123,302 + SO_A0138 0.33 -0.0
123,310 - SO_A0138 0.34 +0.7
123,310 - SO_A0138 0.34 -1.8

Or see this region's nucleotide sequence