Experiment: Cobalt chloride 0.055 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt recJ and SO0953 are separated by 43 nucleotides SO0953 and SO0954 are separated by 35 nucleotides SO0954 and SO0955 are separated by 59 nucleotides SO0955 and ahpF are separated by 65 nucleotides
SO0952: recJ - single-stranded-DNA-specific exonuclease RecJ (NCBI ptt file), at 988,352 to 990,076
recJ
SO0953: SO0953 - hypothetical protein (NCBI ptt file), at 990,120 to 990,449
SO0953
SO0954: SO0954 - acetyltransferase, GNAT family (NCBI ptt file), at 990,485 to 990,904
SO0954
SO0955: SO0955 - hypothetical protein (NCBI ptt file), at 990,964 to 991,149
SO0955
SO0956: ahpF - alkyl hydroperoxide reductase, F subunit (NCBI ptt file), at 991,215 to 992,798
ahpF
Position (kb) 990
991 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 989.547 kb on + strand, within recJ at 989.649 kb on + strand, within recJ at 989.656 kb on + strand, within recJ at 989.692 kb on - strand, within recJ at 989.718 kb on - strand, within recJ at 989.733 kb on - strand, within recJ at 989.802 kb on + strand, within recJ at 989.809 kb on + strand, within recJ at 989.823 kb on + strand, within recJ at 989.898 kb on - strand, within recJ at 989.936 kb on - strand at 990.046 kb on + strand at 990.070 kb on + strand at 990.433 kb on + strand at 990.441 kb on - strand at 990.568 kb on + strand, within SO0954 at 990.568 kb on + strand, within SO0954 at 990.568 kb on + strand, within SO0954 at 990.581 kb on + strand, within SO0954 at 990.658 kb on - strand, within SO0954 at 990.669 kb on - strand, within SO0954 at 990.684 kb on + strand, within SO0954 at 990.726 kb on + strand, within SO0954 at 990.734 kb on - strand, within SO0954 at 990.734 kb on - strand, within SO0954 at 990.768 kb on + strand, within SO0954 at 991.034 kb on + strand, within SO0955 at 991.041 kb on + strand, within SO0955 at 991.057 kb on - strand, within SO0955 at 991.057 kb on - strand, within SO0955 at 991.077 kb on - strand, within SO0955 at 991.212 kb on + strand at 991.212 kb on + strand at 991.222 kb on + strand at 991.230 kb on - strand at 991.230 kb on - strand at 991.306 kb on + strand at 991.376 kb on + strand, within ahpF at 991.376 kb on + strand, within ahpF at 991.528 kb on + strand, within ahpF at 991.536 kb on - strand, within ahpF at 991.568 kb on + strand, within ahpF at 991.576 kb on - strand, within ahpF at 991.576 kb on - strand, within ahpF at 991.631 kb on - strand, within ahpF at 991.671 kb on + strand, within ahpF at 991.672 kb on + strand, within ahpF at 991.677 kb on - strand, within ahpF at 991.680 kb on - strand, within ahpF at 991.698 kb on + strand, within ahpF at 991.706 kb on - strand, within ahpF at 991.714 kb on + strand, within ahpF at 991.747 kb on - strand, within ahpF at 991.865 kb on + strand, within ahpF at 991.865 kb on - strand, within ahpF at 991.865 kb on - strand, within ahpF at 991.880 kb on + strand, within ahpF at 991.880 kb on - strand, within ahpF at 991.888 kb on - strand, within ahpF
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.055 mM remove 989,547 + recJ SO0952 0.69 +1.6 989,649 + recJ SO0952 0.75 -0.5 989,656 + recJ SO0952 0.76 -0.3 989,692 - recJ SO0952 0.78 -0.6 989,718 - recJ SO0952 0.79 +1.0 989,733 - recJ SO0952 0.80 +0.3 989,802 + recJ SO0952 0.84 +0.6 989,809 + recJ SO0952 0.84 -1.0 989,823 + recJ SO0952 0.85 +1.5 989,898 - recJ SO0952 0.90 +0.6 989,936 - -0.1 990,046 + -0.2 990,070 + -0.4 990,433 + -0.1 990,441 - +0.9 990,568 + SO0954 0.20 -0.1 990,568 + SO0954 0.20 +0.4 990,568 + SO0954 0.20 +5.2 990,581 + SO0954 0.23 +0.6 990,658 - SO0954 0.41 +0.5 990,669 - SO0954 0.44 -0.2 990,684 + SO0954 0.47 -0.2 990,726 + SO0954 0.57 -0.7 990,734 - SO0954 0.59 +1.3 990,734 - SO0954 0.59 +0.4 990,768 + SO0954 0.67 +0.1 991,034 + SO0955 0.38 +0.4 991,041 + SO0955 0.41 +0.1 991,057 - SO0955 0.50 +1.5 991,057 - SO0955 0.50 -0.0 991,077 - SO0955 0.61 +3.8 991,212 + +0.6 991,212 + +0.2 991,222 + +1.8 991,230 - +1.1 991,230 - +1.1 991,306 + +0.2 991,376 + ahpF SO0956 0.10 +0.6 991,376 + ahpF SO0956 0.10 +1.4 991,528 + ahpF SO0956 0.20 -1.9 991,536 - ahpF SO0956 0.20 +0.1 991,568 + ahpF SO0956 0.22 +0.3 991,576 - ahpF SO0956 0.23 +1.0 991,576 - ahpF SO0956 0.23 -1.1 991,631 - ahpF SO0956 0.26 -0.5 991,671 + ahpF SO0956 0.29 -0.5 991,672 + ahpF SO0956 0.29 +0.8 991,677 - ahpF SO0956 0.29 -0.7 991,680 - ahpF SO0956 0.29 -0.6 991,698 + ahpF SO0956 0.30 +0.4 991,706 - ahpF SO0956 0.31 -0.2 991,714 + ahpF SO0956 0.32 -1.6 991,747 - ahpF SO0956 0.34 -0.5 991,865 + ahpF SO0956 0.41 +2.1 991,865 - ahpF SO0956 0.41 -0.6 991,865 - ahpF SO0956 0.41 +0.3 991,880 + ahpF SO0956 0.42 -0.8 991,880 - ahpF SO0956 0.42 -1.0 991,888 - ahpF SO0956 0.42 +0.5
Or see this region's nucleotide sequence