Experiment: Cobalt chloride 0.055 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0857 and SO0858 are separated by 654 nucleotides SO0858 and SO0859 are separated by 126 nucleotides
SO0857: SO0857 - ABC transporter, ATP-binding protein (NCBI ptt file), at 879,890 to 880,561
SO0857
SO0858: SO0858 - sodium:alanine symporter family protein (NCBI ptt file), at 881,216 to 882,574
SO0858
SO0859: SO0859 - sensory box histidine kinase/response regulator (NCBI ptt file), at 882,701 to 887,998
SO0859
Position (kb) 881
882
883 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 880.318 kb on - strand, within SO0857 at 880.358 kb on + strand, within SO0857 at 880.366 kb on - strand, within SO0857 at 880.386 kb on + strand, within SO0857 at 880.386 kb on + strand, within SO0857 at 880.455 kb on + strand, within SO0857 at 880.463 kb on - strand, within SO0857 at 880.497 kb on + strand at 880.497 kb on + strand at 880.497 kb on + strand at 880.497 kb on + strand at 880.500 kb on - strand at 880.505 kb on - strand at 880.505 kb on - strand at 880.643 kb on - strand at 880.668 kb on + strand at 880.681 kb on + strand at 880.750 kb on - strand at 880.752 kb on + strand at 880.828 kb on + strand at 880.830 kb on - strand at 880.922 kb on + strand at 880.947 kb on + strand at 881.039 kb on + strand at 881.054 kb on - strand at 881.241 kb on + strand at 881.343 kb on + strand at 881.420 kb on - strand, within SO0858 at 881.580 kb on + strand, within SO0858 at 881.616 kb on - strand, within SO0858 at 881.766 kb on + strand, within SO0858 at 881.773 kb on - strand, within SO0858 at 881.870 kb on - strand, within SO0858 at 881.875 kb on - strand, within SO0858 at 881.896 kb on - strand, within SO0858 at 882.041 kb on + strand, within SO0858 at 882.041 kb on + strand, within SO0858 at 882.041 kb on + strand, within SO0858 at 882.049 kb on - strand, within SO0858 at 882.049 kb on - strand, within SO0858 at 882.049 kb on - strand, within SO0858 at 882.049 kb on - strand, within SO0858 at 882.101 kb on + strand, within SO0858 at 882.108 kb on - strand, within SO0858 at 882.135 kb on + strand, within SO0858 at 882.209 kb on + strand, within SO0858 at 882.267 kb on - strand, within SO0858 at 882.293 kb on - strand, within SO0858 at 882.318 kb on + strand, within SO0858 at 882.318 kb on + strand, within SO0858 at 882.326 kb on - strand, within SO0858 at 882.449 kb on + strand at 882.706 kb on - strand at 882.732 kb on + strand at 882.745 kb on - strand at 882.774 kb on + strand at 882.899 kb on - strand at 882.909 kb on - strand at 882.917 kb on - strand at 883.003 kb on + strand at 883.080 kb on + strand at 883.131 kb on + strand at 883.138 kb on + strand at 883.181 kb on - strand at 883.205 kb on - strand at 883.226 kb on + strand at 883.245 kb on + strand, within SO0859 at 883.253 kb on + strand, within SO0859 at 883.340 kb on - strand, within SO0859 at 883.355 kb on + strand, within SO0859 at 883.422 kb on - strand, within SO0859 at 883.521 kb on + strand, within SO0859
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.055 mM remove 880,318 - SO0857 0.64 +1.0 880,358 + SO0857 0.70 -1.2 880,366 - SO0857 0.71 +0.0 880,386 + SO0857 0.74 -0.6 880,386 + SO0857 0.74 -0.1 880,455 + SO0857 0.84 +0.3 880,463 - SO0857 0.85 +0.9 880,497 + -2.4 880,497 + -1.2 880,497 + -1.6 880,497 + +0.1 880,500 - -1.7 880,505 - -0.1 880,505 - -0.9 880,643 - +2.4 880,668 + +1.0 880,681 + -1.6 880,750 - +1.0 880,752 + +1.0 880,828 + +1.6 880,830 - -1.4 880,922 + +0.1 880,947 + -1.2 881,039 + -1.2 881,054 - +0.4 881,241 + +1.1 881,343 + +1.0 881,420 - SO0858 0.15 -0.7 881,580 + SO0858 0.27 +0.3 881,616 - SO0858 0.29 +0.6 881,766 + SO0858 0.40 -0.6 881,773 - SO0858 0.41 +0.8 881,870 - SO0858 0.48 +1.0 881,875 - SO0858 0.48 +0.5 881,896 - SO0858 0.50 +1.8 882,041 + SO0858 0.61 -0.5 882,041 + SO0858 0.61 +5.9 882,041 + SO0858 0.61 +1.4 882,049 - SO0858 0.61 +2.0 882,049 - SO0858 0.61 -1.2 882,049 - SO0858 0.61 +0.9 882,049 - SO0858 0.61 +0.6 882,101 + SO0858 0.65 -0.4 882,108 - SO0858 0.66 +1.5 882,135 + SO0858 0.68 -0.9 882,209 + SO0858 0.73 +0.5 882,267 - SO0858 0.77 +0.1 882,293 - SO0858 0.79 -0.7 882,318 + SO0858 0.81 -1.4 882,318 + SO0858 0.81 +0.5 882,326 - SO0858 0.82 -1.1 882,449 + -0.9 882,706 - -0.3 882,732 + -1.2 882,745 - -0.8 882,774 + -1.0 882,899 - -2.2 882,909 - -0.2 882,917 - -1.0 883,003 + -0.1 883,080 + -0.7 883,131 + -0.2 883,138 + +1.3 883,181 - -0.3 883,205 - -0.7 883,226 + +1.5 883,245 + SO0859 0.10 -0.4 883,253 + SO0859 0.10 +0.1 883,340 - SO0859 0.12 -0.7 883,355 + SO0859 0.12 -0.3 883,422 - SO0859 0.14 +0.2 883,521 + SO0859 0.15 +2.0
Or see this region's nucleotide sequence