Strain Fitness in Shewanella oneidensis MR-1 around SO0520

Experiment: Cobalt chloride 0.055 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0519 and SO0520 are separated by 47 nucleotidesSO0520 and SO0521 are separated by 167 nucleotidesSO0521 and mscL are separated by 85 nucleotides SO0519: SO0519 - cation efflux protein, putative (NCBI ptt file), at 540,393 to 541,694 SO0519 SO0520: SO0520 - heavy metal efflux pump, CzcA family (NCBI ptt file), at 541,742 to 544,969 SO0520 SO0521: SO0521 - conserved hypothetical protein (NCBI ptt file), at 545,137 to 545,460 SO0521 SO0522: mscL - large conductance mechanosensitive channel protein (NCBI ptt file), at 545,546 to 545,956 mscL Position (kb) 541 542 543 544 545Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8at 540.782 kb on - strand, within SO0519at 540.787 kb on + strand, within SO0519at 540.795 kb on - strand, within SO0519at 540.826 kb on + strand, within SO0519at 540.868 kb on + strand, within SO0519at 540.876 kb on - strand, within SO0519at 540.898 kb on - strand, within SO0519at 540.915 kb on + strand, within SO0519at 540.923 kb on - strand, within SO0519at 540.923 kb on - strand, within SO0519at 540.938 kb on - strand, within SO0519at 540.988 kb on - strand, within SO0519at 540.990 kb on + strand, within SO0519at 541.052 kb on - strand, within SO0519at 541.058 kb on + strand, within SO0519at 541.105 kb on - strand, within SO0519at 541.123 kb on - strand, within SO0519at 541.123 kb on - strand, within SO0519at 541.128 kb on - strand, within SO0519at 541.233 kb on - strand, within SO0519at 541.245 kb on + strand, within SO0519at 541.245 kb on + strand, within SO0519at 541.245 kb on + strand, within SO0519at 541.253 kb on - strand, within SO0519at 541.310 kb on - strand, within SO0519at 541.312 kb on + strand, within SO0519at 541.312 kb on + strand, within SO0519at 541.320 kb on - strand, within SO0519at 541.340 kb on - strand, within SO0519at 541.340 kb on - strand, within SO0519at 541.388 kb on + strand, within SO0519at 541.396 kb on - strand, within SO0519at 541.585 kb on + strandat 541.592 kb on + strandat 541.615 kb on + strandat 541.659 kb on - strandat 541.661 kb on + strandat 541.669 kb on - strandat 541.669 kb on - strandat 541.712 kb on - strandat 541.847 kb on + strandat 541.904 kb on + strandat 542.047 kb on + strandat 542.080 kb on + strand, within SO0520at 542.088 kb on - strand, within SO0520at 542.088 kb on - strand, within SO0520at 542.088 kb on - strand, within SO0520at 542.235 kb on - strand, within SO0520at 542.362 kb on + strand, within SO0520at 542.370 kb on - strand, within SO0520at 542.438 kb on + strand, within SO0520at 542.438 kb on - strand, within SO0520at 542.443 kb on + strand, within SO0520at 542.523 kb on - strand, within SO0520at 542.603 kb on - strand, within SO0520at 542.617 kb on - strand, within SO0520at 542.728 kb on + strand, within SO0520at 542.728 kb on + strand, within SO0520at 542.728 kb on + strand, within SO0520at 542.728 kb on + strand, within SO0520at 542.728 kb on + strand, within SO0520at 542.728 kb on + strand, within SO0520at 542.728 kb on + strand, within SO0520at 542.728 kb on + strand, within SO0520at 542.728 kb on + strand, within SO0520at 542.728 kb on + strand, within SO0520at 542.728 kb on + strand, within SO0520at 542.728 kb on + strand, within SO0520at 542.728 kb on + strand, within SO0520at 542.728 kb on + strand, within SO0520at 542.736 kb on - strand, within SO0520at 542.736 kb on - strand, within SO0520at 542.736 kb on - strand, within SO0520at 542.736 kb on - strand, within SO0520at 542.736 kb on - strand, within SO0520at 542.736 kb on - strand, within SO0520at 542.736 kb on - strand, within SO0520at 542.736 kb on - strand, within SO0520at 542.736 kb on - strand, within SO0520at 542.736 kb on - strand, within SO0520at 542.736 kb on - strand, within SO0520at 542.736 kb on - strand, within SO0520at 542.736 kb on - strand, within SO0520at 542.736 kb on - strand, within SO0520at 542.736 kb on - strand, within SO0520at 542.736 kb on - strand, within SO0520at 542.750 kb on - strand, within SO0520at 542.818 kb on - strand, within SO0520at 542.818 kb on - strand, within SO0520at 542.931 kb on + strand, within SO0520at 542.931 kb on + strand, within SO0520at 542.934 kb on - strand, within SO0520at 542.939 kb on - strand, within SO0520at 543.008 kb on - strand, within SO0520at 543.008 kb on - strand, within SO0520at 543.075 kb on - strand, within SO0520at 543.075 kb on - strand, within SO0520at 543.086 kb on + strand, within SO0520at 543.115 kb on + strand, within SO0520at 543.115 kb on + strand, within SO0520at 543.124 kb on + strand, within SO0520at 543.146 kb on + strand, within SO0520at 543.176 kb on - strand, within SO0520at 543.198 kb on + strand, within SO0520at 543.213 kb on - strand, within SO0520at 543.263 kb on + strand, within SO0520at 543.367 kb on + strand, within SO0520at 543.402 kb on + strand, within SO0520at 543.423 kb on - strand, within SO0520at 543.436 kb on + strand, within SO0520at 543.436 kb on + strand, within SO0520at 543.514 kb on - strand, within SO0520at 543.543 kb on + strand, within SO0520at 543.584 kb on - strand, within SO0520at 543.584 kb on - strand, within SO0520at 543.602 kb on - strand, within SO0520at 543.710 kb on + strand, within SO0520at 543.711 kb on - strand, within SO0520at 543.718 kb on - strand, within SO0520at 543.746 kb on - strand, within SO0520at 543.746 kb on - strand, within SO0520at 543.861 kb on + strand, within SO0520at 543.952 kb on - strand, within SO0520at 543.954 kb on + strand, within SO0520at 544.006 kb on + strand, within SO0520at 544.014 kb on + strand, within SO0520at 544.014 kb on + strand, within SO0520at 544.014 kb on - strand, within SO0520at 544.066 kb on + strand, within SO0520at 544.112 kb on - strand, within SO0520at 544.191 kb on + strand, within SO0520at 544.199 kb on - strand, within SO0520at 544.271 kb on - strand, within SO0520at 544.351 kb on - strand, within SO0520at 544.529 kb on - strand, within SO0520at 544.649 kb on - strandat 544.692 kb on + strandat 544.726 kb on + strandat 544.732 kb on - strandat 544.777 kb on - strandat 544.781 kb on + strandat 544.789 kb on - strandat 544.813 kb on - strandat 544.826 kb on + strandat 544.932 kb on - strandat 544.966 kb on - strandat 544.983 kb on - strandat 545.005 kb on + strandat 545.079 kb on + strandat 545.087 kb on - strandat 545.219 kb on + strand, within SO0521at 545.227 kb on + strand, within SO0521at 545.277 kb on + strand, within SO0521at 545.285 kb on - strand, within SO0521at 545.291 kb on + strand, within SO0521at 545.292 kb on - strand, within SO0521at 545.344 kb on + strand, within SO0521at 545.359 kb on - strand, within SO0521at 545.385 kb on + strand, within SO0521at 545.385 kb on + strand, within SO0521at 545.419 kb on + strand, within SO0521at 545.419 kb on + strand, within SO0521at 545.460 kb on + strandat 545.463 kb on - strandat 545.557 kb on + strandat 545.562 kb on + strandat 545.570 kb on - strandat 545.570 kb on - strandat 545.570 kb on - strandat 545.614 kb on - strand, within mscLat 545.761 kb on - strand, within mscLat 545.779 kb on - strand, within mscLat 545.781 kb on + strand, within mscLat 545.807 kb on + strand, within mscLat 545.807 kb on + strand, within mscLat 545.815 kb on - strand, within mscLat 545.962 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.055 mM
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540,782 - SO0519 0.30 +1.3
540,787 + SO0519 0.30 +2.3
540,795 - SO0519 0.31 +3.0
540,826 + SO0519 0.33 +0.8
540,868 + SO0519 0.36 +1.5
540,876 - SO0519 0.37 +2.3
540,898 - SO0519 0.39 +2.5
540,915 + SO0519 0.40 +2.0
540,923 - SO0519 0.41 -1.0
540,923 - SO0519 0.41 +1.6
540,938 - SO0519 0.42 +2.9
540,988 - SO0519 0.46 +1.9
540,990 + SO0519 0.46 +1.7
541,052 - SO0519 0.51 +2.5
541,058 + SO0519 0.51 +1.9
541,105 - SO0519 0.55 +1.9
541,123 - SO0519 0.56 +1.0
541,123 - SO0519 0.56 +0.9
541,128 - SO0519 0.56 +2.3
541,233 - SO0519 0.65 +3.7
541,245 + SO0519 0.65 +1.9
541,245 + SO0519 0.65 +1.1
541,245 + SO0519 0.65 -0.3
541,253 - SO0519 0.66 +0.7
541,310 - SO0519 0.70 +2.1
541,312 + SO0519 0.71 +0.1
541,312 + SO0519 0.71 +1.9
541,320 - SO0519 0.71 +3.6
541,340 - SO0519 0.73 -0.9
541,340 - SO0519 0.73 +2.0
541,388 + SO0519 0.76 +3.2
541,396 - SO0519 0.77 +2.4
541,585 + +2.4
541,592 + +0.9
541,615 + +1.5
541,659 - +2.0
541,661 + +1.6
541,669 - +2.2
541,669 - +2.7
541,712 - +1.7
541,847 + +3.2
541,904 + +4.0
542,047 + +4.0
542,080 + SO0520 0.10 +3.4
542,088 - SO0520 0.11 +3.2
542,088 - SO0520 0.11 +2.0
542,088 - SO0520 0.11 +3.0
542,235 - SO0520 0.15 +0.1
542,362 + SO0520 0.19 +2.8
542,370 - SO0520 0.19 +0.5
542,438 + SO0520 0.22 +1.9
542,438 - SO0520 0.22 +3.1
542,443 + SO0520 0.22 +0.9
542,523 - SO0520 0.24 +2.3
542,603 - SO0520 0.27 +2.6
542,617 - SO0520 0.27 +2.4
542,728 + SO0520 0.31 +1.4
542,728 + SO0520 0.31 +2.7
542,728 + SO0520 0.31 +0.2
542,728 + SO0520 0.31 +2.5
542,728 + SO0520 0.31 +0.9
542,728 + SO0520 0.31 +1.9
542,728 + SO0520 0.31 +2.8
542,728 + SO0520 0.31 +2.1
542,728 + SO0520 0.31 +2.1
542,728 + SO0520 0.31 +3.2
542,728 + SO0520 0.31 +0.8
542,728 + SO0520 0.31 +2.1
542,728 + SO0520 0.31 +1.0
542,728 + SO0520 0.31 +2.5
542,736 - SO0520 0.31 +3.0
542,736 - SO0520 0.31 +2.5
542,736 - SO0520 0.31 +1.9
542,736 - SO0520 0.31 +1.8
542,736 - SO0520 0.31 +1.2
542,736 - SO0520 0.31 -1.8
542,736 - SO0520 0.31 -0.1
542,736 - SO0520 0.31 -0.4
542,736 - SO0520 0.31 +0.7
542,736 - SO0520 0.31 +2.2
542,736 - SO0520 0.31 +1.4
542,736 - SO0520 0.31 +1.9
542,736 - SO0520 0.31 +3.3
542,736 - SO0520 0.31 +2.0
542,736 - SO0520 0.31 +3.0
542,736 - SO0520 0.31 +0.1
542,750 - SO0520 0.31 +1.5
542,818 - SO0520 0.33 +3.3
542,818 - SO0520 0.33 +2.8
542,931 + SO0520 0.37 +1.1
542,931 + SO0520 0.37 +3.2
542,934 - SO0520 0.37 +2.3
542,939 - SO0520 0.37 +2.4
543,008 - SO0520 0.39 +3.3
543,008 - SO0520 0.39 +1.7
543,075 - SO0520 0.41 +1.5
543,075 - SO0520 0.41 +2.3
543,086 + SO0520 0.42 +2.7
543,115 + SO0520 0.43 +1.8
543,115 + SO0520 0.43 -0.4
543,124 + SO0520 0.43 +0.5
543,146 + SO0520 0.43 +1.5
543,176 - SO0520 0.44 +2.1
543,198 + SO0520 0.45 +2.9
543,213 - SO0520 0.46 +2.7
543,263 + SO0520 0.47 +2.7
543,367 + SO0520 0.50 +1.7
543,402 + SO0520 0.51 +2.0
543,423 - SO0520 0.52 +0.1
543,436 + SO0520 0.52 +3.7
543,436 + SO0520 0.52 +3.3
543,514 - SO0520 0.55 +2.6
543,543 + SO0520 0.56 +2.2
543,584 - SO0520 0.57 +0.7
543,584 - SO0520 0.57 +2.0
543,602 - SO0520 0.58 +1.9
543,710 + SO0520 0.61 +4.2
543,711 - SO0520 0.61 +2.7
543,718 - SO0520 0.61 +1.4
543,746 - SO0520 0.62 +2.5
543,746 - SO0520 0.62 +1.4
543,861 + SO0520 0.66 +2.1
543,952 - SO0520 0.68 +2.5
543,954 + SO0520 0.69 +2.1
544,006 + SO0520 0.70 +0.6
544,014 + SO0520 0.70 +2.1
544,014 + SO0520 0.70 +2.3
544,014 - SO0520 0.70 +2.6
544,066 + SO0520 0.72 +3.6
544,112 - SO0520 0.73 +1.9
544,191 + SO0520 0.76 +1.9
544,199 - SO0520 0.76 +2.1
544,271 - SO0520 0.78 +1.7
544,351 - SO0520 0.81 +0.8
544,529 - SO0520 0.86 +3.8
544,649 - +3.8
544,692 + +2.2
544,726 + +1.8
544,732 - +2.7
544,777 - +2.5
544,781 + +2.2
544,789 - +2.0
544,813 - +2.5
544,826 + +1.8
544,932 - +0.5
544,966 - -0.9
544,983 - +0.9
545,005 + -2.3
545,079 + +0.5
545,087 - -2.0
545,219 + SO0521 0.25 -1.5
545,227 + SO0521 0.28 +0.9
545,277 + SO0521 0.43 -0.5
545,285 - SO0521 0.46 +2.2
545,291 + SO0521 0.48 +1.5
545,292 - SO0521 0.48 -2.4
545,344 + SO0521 0.64 -0.4
545,359 - SO0521 0.69 -0.0
545,385 + SO0521 0.77 +1.6
545,385 + SO0521 0.77 -0.9
545,419 + SO0521 0.87 +0.3
545,419 + SO0521 0.87 -0.1
545,460 + -0.4
545,463 - -0.4
545,557 + -1.5
545,562 + +0.1
545,570 - +0.0
545,570 - +0.8
545,570 - -0.5
545,614 - mscL SO0522 0.17 -0.6
545,761 - mscL SO0522 0.52 -1.2
545,779 - mscL SO0522 0.57 +0.0
545,781 + mscL SO0522 0.57 -0.2
545,807 + mscL SO0522 0.64 +7.9
545,807 + mscL SO0522 0.64 +0.1
545,815 - mscL SO0522 0.65 -1.3
545,962 - -0.7

Or see this region's nucleotide sequence