Strain Fitness in Shewanella oneidensis MR-1 around SO0329

Experiment: Cobalt chloride 0.055 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0326 and SO0329 are separated by 329 nucleotidesSO0329 and SO0330 are separated by 21 nucleotides SO0326: SO0326 - hypothetical protein (NCBI ptt file), at 331,225 to 332,148 SO0326 SO0329: SO0329 - hypothetical protein (NCBI ptt file), at 332,478 to 332,699 SO0329 SO0330: SO0330 - conserved hypothetical protein (NCBI ptt file), at 332,721 to 334,175 SO0330 Position (kb) 332 333Strain fitness (log2 ratio) -2 -1 0 1 2at 331.644 kb on + strand, within SO0326at 331.751 kb on - strand, within SO0326at 331.777 kb on - strand, within SO0326at 331.777 kb on - strand, within SO0326at 331.835 kb on - strand, within SO0326at 331.839 kb on + strand, within SO0326at 331.859 kb on + strand, within SO0326at 331.859 kb on + strand, within SO0326at 331.859 kb on + strand, within SO0326at 331.859 kb on + strand, within SO0326at 331.859 kb on + strand, within SO0326at 331.859 kb on + strand, within SO0326at 331.859 kb on + strand, within SO0326at 331.893 kb on + strand, within SO0326at 331.976 kb on - strand, within SO0326at 332.021 kb on + strand, within SO0326at 332.192 kb on + strandat 332.210 kb on - strandat 332.219 kb on - strandat 332.219 kb on - strandat 332.260 kb on + strandat 332.260 kb on + strandat 332.260 kb on + strandat 332.268 kb on - strandat 332.268 kb on - strandat 332.268 kb on - strandat 332.268 kb on - strandat 332.292 kb on - strandat 332.311 kb on - strandat 332.352 kb on - strandat 332.375 kb on + strandat 332.383 kb on - strandat 332.383 kb on - strandat 332.383 kb on - strandat 332.404 kb on - strandat 332.418 kb on + strandat 332.421 kb on - strandat 332.426 kb on - strandat 332.426 kb on - strandat 332.477 kb on - strandat 332.477 kb on - strandat 332.530 kb on + strand, within SO0329at 332.530 kb on + strand, within SO0329at 332.530 kb on + strand, within SO0329at 332.530 kb on + strand, within SO0329at 332.538 kb on - strand, within SO0329at 332.538 kb on - strand, within SO0329at 332.538 kb on - strand, within SO0329at 332.538 kb on - strand, within SO0329at 332.540 kb on + strand, within SO0329at 332.540 kb on - strand, within SO0329at 332.553 kb on + strand, within SO0329at 332.562 kb on - strand, within SO0329at 332.568 kb on + strand, within SO0329at 332.618 kb on - strand, within SO0329at 332.634 kb on - strand, within SO0329at 332.665 kb on + strand, within SO0329at 332.673 kb on - strand, within SO0329at 332.677 kb on + strandat 332.702 kb on - strandat 332.734 kb on - strandat 332.916 kb on - strand, within SO0330at 332.916 kb on - strand, within SO0330at 332.918 kb on + strand, within SO0330at 332.918 kb on + strand, within SO0330at 332.918 kb on + strand, within SO0330at 332.918 kb on + strand, within SO0330at 332.918 kb on + strand, within SO0330at 332.926 kb on - strand, within SO0330at 332.926 kb on - strand, within SO0330at 332.926 kb on - strand, within SO0330at 332.926 kb on - strand, within SO0330at 332.926 kb on - strand, within SO0330at 332.926 kb on - strand, within SO0330at 332.926 kb on - strand, within SO0330at 332.950 kb on - strand, within SO0330at 332.982 kb on - strand, within SO0330at 332.999 kb on + strand, within SO0330at 332.999 kb on + strand, within SO0330at 333.007 kb on - strand, within SO0330at 333.031 kb on - strand, within SO0330at 333.090 kb on - strand, within SO0330at 333.122 kb on + strand, within SO0330at 333.142 kb on + strand, within SO0330at 333.150 kb on - strand, within SO0330at 333.163 kb on + strand, within SO0330at 333.163 kb on + strand, within SO0330at 333.229 kb on + strand, within SO0330at 333.237 kb on - strand, within SO0330at 333.331 kb on - strand, within SO0330at 333.438 kb on + strand, within SO0330at 333.444 kb on - strand, within SO0330at 333.508 kb on - strand, within SO0330at 333.611 kb on + strand, within SO0330at 333.614 kb on + strand, within SO0330at 333.639 kb on - strand, within SO0330at 333.651 kb on + strand, within SO0330at 333.673 kb on + strand, within SO0330at 333.673 kb on + strand, within SO0330at 333.673 kb on + strand, within SO0330at 333.673 kb on + strand, within SO0330at 333.681 kb on - strand, within SO0330at 333.681 kb on - strand, within SO0330at 333.681 kb on - strand, within SO0330at 333.683 kb on + strand, within SO0330at 333.686 kb on - strand, within SO0330

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.055 mM
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331,644 + SO0326 0.45 +1.9
331,751 - SO0326 0.57 +0.1
331,777 - SO0326 0.60 +1.1
331,777 - SO0326 0.60 -2.3
331,835 - SO0326 0.66 -0.4
331,839 + SO0326 0.66 -1.1
331,859 + SO0326 0.69 -1.4
331,859 + SO0326 0.69 -0.1
331,859 + SO0326 0.69 -1.3
331,859 + SO0326 0.69 -0.8
331,859 + SO0326 0.69 +0.8
331,859 + SO0326 0.69 -1.6
331,859 + SO0326 0.69 -1.9
331,893 + SO0326 0.72 -1.1
331,976 - SO0326 0.81 +0.9
332,021 + SO0326 0.86 +1.5
332,192 + +0.8
332,210 - -0.7
332,219 - +0.1
332,219 - +0.9
332,260 + -0.5
332,260 + +0.3
332,260 + +0.9
332,268 - +0.1
332,268 - +0.4
332,268 - +0.7
332,268 - +0.2
332,292 - -0.4
332,311 - +0.1
332,352 - +0.9
332,375 + +0.1
332,383 - +1.3
332,383 - +1.4
332,383 - +1.0
332,404 - +0.2
332,418 + -1.4
332,421 - -1.6
332,426 - -0.1
332,426 - +0.2
332,477 - -0.1
332,477 - -1.3
332,530 + SO0329 0.23 -1.2
332,530 + SO0329 0.23 +1.5
332,530 + SO0329 0.23 -1.1
332,530 + SO0329 0.23 +0.3
332,538 - SO0329 0.27 +1.4
332,538 - SO0329 0.27 +0.7
332,538 - SO0329 0.27 -0.1
332,538 - SO0329 0.27 +1.6
332,540 + SO0329 0.28 -1.5
332,540 - SO0329 0.28 -0.4
332,553 + SO0329 0.34 +1.6
332,562 - SO0329 0.38 +0.5
332,568 + SO0329 0.41 +1.5
332,618 - SO0329 0.63 +0.1
332,634 - SO0329 0.70 +0.2
332,665 + SO0329 0.84 +1.5
332,673 - SO0329 0.88 -0.5
332,677 + +0.0
332,702 - -2.2
332,734 - -0.8
332,916 - SO0330 0.13 +1.1
332,916 - SO0330 0.13 +0.2
332,918 + SO0330 0.14 -2.5
332,918 + SO0330 0.14 -0.1
332,918 + SO0330 0.14 +2.4
332,918 + SO0330 0.14 +0.3
332,918 + SO0330 0.14 -0.2
332,926 - SO0330 0.14 +0.4
332,926 - SO0330 0.14 -0.5
332,926 - SO0330 0.14 -0.7
332,926 - SO0330 0.14 +0.8
332,926 - SO0330 0.14 -1.7
332,926 - SO0330 0.14 -0.6
332,926 - SO0330 0.14 +0.7
332,950 - SO0330 0.16 +1.0
332,982 - SO0330 0.18 +0.8
332,999 + SO0330 0.19 -0.5
332,999 + SO0330 0.19 +0.1
333,007 - SO0330 0.20 +0.3
333,031 - SO0330 0.21 -0.8
333,090 - SO0330 0.25 -0.8
333,122 + SO0330 0.28 +1.1
333,142 + SO0330 0.29 +0.4
333,150 - SO0330 0.29 -0.0
333,163 + SO0330 0.30 -1.5
333,163 + SO0330 0.30 +0.3
333,229 + SO0330 0.35 -1.6
333,237 - SO0330 0.35 -2.1
333,331 - SO0330 0.42 +1.1
333,438 + SO0330 0.49 +0.2
333,444 - SO0330 0.50 +0.1
333,508 - SO0330 0.54 -0.4
333,611 + SO0330 0.61 +0.8
333,614 + SO0330 0.61 -1.6
333,639 - SO0330 0.63 -0.8
333,651 + SO0330 0.64 +0.1
333,673 + SO0330 0.65 -0.1
333,673 + SO0330 0.65 -0.3
333,673 + SO0330 0.65 +0.7
333,673 + SO0330 0.65 -0.6
333,681 - SO0330 0.66 +0.1
333,681 - SO0330 0.66 -0.4
333,681 - SO0330 0.66 +0.4
333,683 + SO0330 0.66 +1.2
333,686 - SO0330 0.66 -2.3

Or see this region's nucleotide sequence