Experiment: Cobalt chloride 0.055 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0157 and SO0159 are separated by 476 nucleotides SO0159 and SO0160 are separated by 164 nucleotides
SO0157: SO0157 - proton/glutamate symporter (NCBI ptt file), at 164,022 to 165,260
SO0157
SO0159: SO0159 - hypothetical protein (NCBI ptt file), at 165,737 to 166,093
SO0159
SO0160: SO0160 - transporter, putative (NCBI ptt file), at 166,258 to 167,817
SO0160
Position (kb) 165
166
167 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 164.755 kb on + strand, within SO0157 at 164.755 kb on + strand, within SO0157 at 164.755 kb on + strand, within SO0157 at 164.755 kb on + strand, within SO0157 at 164.755 kb on + strand, within SO0157 at 164.755 kb on + strand, within SO0157 at 164.755 kb on + strand, within SO0157 at 164.755 kb on + strand, within SO0157 at 164.755 kb on + strand, within SO0157 at 164.755 kb on + strand, within SO0157 at 164.755 kb on + strand, within SO0157 at 164.761 kb on + strand, within SO0157 at 164.763 kb on - strand, within SO0157 at 164.763 kb on - strand, within SO0157 at 164.763 kb on - strand, within SO0157 at 164.763 kb on - strand, within SO0157 at 164.763 kb on - strand, within SO0157 at 164.763 kb on - strand, within SO0157 at 164.763 kb on - strand, within SO0157 at 164.763 kb on - strand, within SO0157 at 164.763 kb on - strand, within SO0157 at 164.766 kb on + strand, within SO0157 at 164.840 kb on + strand, within SO0157 at 164.844 kb on + strand, within SO0157 at 164.844 kb on + strand, within SO0157 at 164.858 kb on + strand, within SO0157 at 164.876 kb on - strand, within SO0157 at 164.909 kb on - strand, within SO0157 at 164.925 kb on + strand, within SO0157 at 164.939 kb on + strand, within SO0157 at 164.948 kb on - strand, within SO0157 at 164.948 kb on - strand, within SO0157 at 164.999 kb on + strand, within SO0157 at 164.999 kb on + strand, within SO0157 at 165.007 kb on - strand, within SO0157 at 165.007 kb on - strand, within SO0157 at 165.007 kb on - strand, within SO0157 at 165.035 kb on + strand, within SO0157 at 165.035 kb on + strand, within SO0157 at 165.062 kb on + strand, within SO0157 at 165.101 kb on - strand, within SO0157 at 165.346 kb on - strand at 165.346 kb on - strand at 165.462 kb on - strand at 165.512 kb on + strand at 165.576 kb on + strand at 165.576 kb on + strand at 165.578 kb on + strand at 165.578 kb on + strand at 165.584 kb on - strand at 165.584 kb on - strand at 165.586 kb on - strand at 165.586 kb on - strand at 165.586 kb on - strand at 165.586 kb on - strand at 165.618 kb on + strand at 165.626 kb on - strand at 165.627 kb on + strand at 165.635 kb on + strand at 165.635 kb on - strand at 165.669 kb on + strand at 165.670 kb on + strand at 165.670 kb on + strand at 165.670 kb on + strand at 165.670 kb on + strand at 165.670 kb on + strand at 165.678 kb on - strand at 165.678 kb on - strand at 165.692 kb on - strand at 165.778 kb on + strand, within SO0159 at 165.778 kb on + strand, within SO0159 at 165.778 kb on - strand, within SO0159 at 165.783 kb on + strand, within SO0159 at 165.938 kb on + strand, within SO0159 at 165.938 kb on + strand, within SO0159 at 166.027 kb on - strand, within SO0159 at 166.040 kb on - strand, within SO0159 at 166.050 kb on - strand, within SO0159 at 166.160 kb on + strand at 166.188 kb on + strand at 166.190 kb on + strand at 166.190 kb on + strand at 166.190 kb on + strand at 166.198 kb on - strand at 166.198 kb on - strand at 166.254 kb on - strand at 166.256 kb on + strand at 166.256 kb on + strand at 166.256 kb on + strand at 166.256 kb on + strand at 166.256 kb on + strand at 166.256 kb on + strand at 166.256 kb on + strand at 166.256 kb on + strand at 166.256 kb on + strand at 166.256 kb on + strand at 166.264 kb on - strand at 166.264 kb on - strand at 166.264 kb on - strand at 166.264 kb on - strand at 166.264 kb on - strand at 166.264 kb on - strand at 166.264 kb on - strand at 166.264 kb on - strand at 166.264 kb on - strand at 166.264 kb on - strand at 166.264 kb on - strand at 166.264 kb on - strand at 166.264 kb on - strand at 166.264 kb on - strand at 166.294 kb on + strand at 166.314 kb on - strand at 166.337 kb on + strand at 166.355 kb on - strand at 166.460 kb on - strand, within SO0160 at 166.538 kb on - strand, within SO0160 at 166.545 kb on + strand, within SO0160 at 166.545 kb on + strand, within SO0160 at 166.600 kb on + strand, within SO0160 at 166.600 kb on + strand, within SO0160 at 166.632 kb on + strand, within SO0160 at 166.640 kb on + strand, within SO0160 at 166.640 kb on + strand, within SO0160 at 166.640 kb on + strand, within SO0160 at 166.640 kb on + strand, within SO0160 at 166.648 kb on - strand, within SO0160 at 166.658 kb on - strand, within SO0160 at 166.686 kb on + strand, within SO0160 at 166.694 kb on - strand, within SO0160 at 166.756 kb on + strand, within SO0160 at 166.834 kb on + strand, within SO0160 at 166.834 kb on + strand, within SO0160 at 166.834 kb on + strand, within SO0160 at 166.834 kb on + strand, within SO0160 at 166.834 kb on + strand, within SO0160 at 166.842 kb on - strand, within SO0160 at 166.842 kb on - strand, within SO0160 at 166.842 kb on - strand, within SO0160 at 166.842 kb on - strand, within SO0160 at 166.842 kb on - strand, within SO0160 at 166.842 kb on - strand, within SO0160 at 166.842 kb on - strand, within SO0160 at 166.842 kb on - strand, within SO0160 at 166.842 kb on - strand, within SO0160 at 166.842 kb on - strand, within SO0160 at 166.891 kb on + strand, within SO0160 at 166.891 kb on + strand, within SO0160 at 166.891 kb on + strand, within SO0160 at 166.891 kb on + strand, within SO0160 at 166.891 kb on + strand, within SO0160 at 166.891 kb on + strand, within SO0160 at 166.891 kb on + strand, within SO0160 at 166.891 kb on + strand, within SO0160 at 166.891 kb on + strand, within SO0160 at 166.899 kb on - strand, within SO0160 at 166.899 kb on - strand, within SO0160 at 166.899 kb on - strand, within SO0160 at 166.899 kb on - strand, within SO0160 at 166.899 kb on - strand, within SO0160 at 166.943 kb on + strand, within SO0160 at 166.945 kb on + strand, within SO0160 at 166.960 kb on + strand, within SO0160 at 167.024 kb on + strand, within SO0160 at 167.037 kb on + strand, within SO0160 at 167.045 kb on - strand, within SO0160 at 167.047 kb on + strand, within SO0160 at 167.048 kb on - strand, within SO0160 at 167.048 kb on - strand, within SO0160 at 167.081 kb on + strand, within SO0160
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.055 mM remove 164,755 + SO0157 0.59 +1.0 164,755 + SO0157 0.59 +1.8 164,755 + SO0157 0.59 +0.1 164,755 + SO0157 0.59 +1.2 164,755 + SO0157 0.59 -0.4 164,755 + SO0157 0.59 +1.8 164,755 + SO0157 0.59 -2.1 164,755 + SO0157 0.59 -1.9 164,755 + SO0157 0.59 -1.4 164,755 + SO0157 0.59 +0.1 164,755 + SO0157 0.59 +0.7 164,761 + SO0157 0.60 +1.1 164,763 - SO0157 0.60 +1.9 164,763 - SO0157 0.60 +0.6 164,763 - SO0157 0.60 -0.4 164,763 - SO0157 0.60 +0.6 164,763 - SO0157 0.60 +2.4 164,763 - SO0157 0.60 +2.4 164,763 - SO0157 0.60 +0.4 164,763 - SO0157 0.60 -0.5 164,763 - SO0157 0.60 +0.5 164,766 + SO0157 0.60 +0.3 164,840 + SO0157 0.66 -0.9 164,844 + SO0157 0.66 -0.2 164,844 + SO0157 0.66 +1.2 164,858 + SO0157 0.67 -1.2 164,876 - SO0157 0.69 -1.1 164,909 - SO0157 0.72 +0.3 164,925 + SO0157 0.73 -1.0 164,939 + SO0157 0.74 -0.2 164,948 - SO0157 0.75 +0.1 164,948 - SO0157 0.75 +1.0 164,999 + SO0157 0.79 -1.0 164,999 + SO0157 0.79 +0.3 165,007 - SO0157 0.79 +1.2 165,007 - SO0157 0.79 +1.1 165,007 - SO0157 0.79 -2.2 165,035 + SO0157 0.82 +1.3 165,035 + SO0157 0.82 +0.4 165,062 + SO0157 0.84 -1.6 165,101 - SO0157 0.87 -0.6 165,346 - +0.3 165,346 - -0.5 165,462 - -0.4 165,512 + -0.6 165,576 + +2.0 165,576 + +0.9 165,578 + +0.3 165,578 + -0.9 165,584 - -1.7 165,584 - -1.7 165,586 - -1.0 165,586 - +0.1 165,586 - -0.8 165,586 - -2.4 165,618 + -1.0 165,626 - -0.4 165,627 + -0.5 165,635 + -0.5 165,635 - +0.5 165,669 + -0.7 165,670 + -0.3 165,670 + -0.5 165,670 + +2.0 165,670 + -0.0 165,670 + -1.2 165,678 - +0.6 165,678 - -0.0 165,692 - +0.1 165,778 + SO0159 0.11 -1.1 165,778 + SO0159 0.11 +0.5 165,778 - SO0159 0.11 -0.9 165,783 + SO0159 0.13 +1.1 165,938 + SO0159 0.56 +0.4 165,938 + SO0159 0.56 -1.3 166,027 - SO0159 0.81 -1.3 166,040 - SO0159 0.85 -0.2 166,050 - SO0159 0.88 -0.2 166,160 + +0.5 166,188 + +0.2 166,190 + +1.9 166,190 + +0.0 166,190 + -0.4 166,198 - -0.4 166,198 - +0.0 166,254 - +0.5 166,256 + +1.2 166,256 + -0.9 166,256 + -0.5 166,256 + -0.6 166,256 + +1.5 166,256 + +0.4 166,256 + +0.0 166,256 + -0.3 166,256 + -1.7 166,256 + +1.1 166,264 - -1.8 166,264 - +0.5 166,264 - -0.4 166,264 - +0.6 166,264 - -0.4 166,264 - -0.8 166,264 - +1.4 166,264 - -1.2 166,264 - +1.0 166,264 - +0.0 166,264 - +0.6 166,264 - -0.0 166,264 - -1.1 166,264 - -1.6 166,294 + -0.7 166,314 - +0.7 166,337 + +0.1 166,355 - -2.1 166,460 - SO0160 0.13 -0.1 166,538 - SO0160 0.18 +0.7 166,545 + SO0160 0.18 +1.1 166,545 + SO0160 0.18 -1.8 166,600 + SO0160 0.22 +2.0 166,600 + SO0160 0.22 -1.9 166,632 + SO0160 0.24 -0.8 166,640 + SO0160 0.24 +1.0 166,640 + SO0160 0.24 -0.5 166,640 + SO0160 0.24 -0.9 166,640 + SO0160 0.24 -0.5 166,648 - SO0160 0.25 -1.3 166,658 - SO0160 0.26 +3.0 166,686 + SO0160 0.27 -0.1 166,694 - SO0160 0.28 +0.6 166,756 + SO0160 0.32 -0.7 166,834 + SO0160 0.37 -1.8 166,834 + SO0160 0.37 +0.9 166,834 + SO0160 0.37 +0.9 166,834 + SO0160 0.37 +1.6 166,834 + SO0160 0.37 +0.0 166,842 - SO0160 0.37 -0.8 166,842 - SO0160 0.37 -0.8 166,842 - SO0160 0.37 +0.8 166,842 - SO0160 0.37 -1.0 166,842 - SO0160 0.37 -2.1 166,842 - SO0160 0.37 -2.0 166,842 - SO0160 0.37 +0.6 166,842 - SO0160 0.37 +2.3 166,842 - SO0160 0.37 +0.0 166,842 - SO0160 0.37 +1.0 166,891 + SO0160 0.41 +1.1 166,891 + SO0160 0.41 +2.0 166,891 + SO0160 0.41 +0.1 166,891 + SO0160 0.41 -0.1 166,891 + SO0160 0.41 +0.2 166,891 + SO0160 0.41 -1.2 166,891 + SO0160 0.41 -0.1 166,891 + SO0160 0.41 +0.7 166,891 + SO0160 0.41 -1.1 166,899 - SO0160 0.41 -2.4 166,899 - SO0160 0.41 +0.4 166,899 - SO0160 0.41 -0.4 166,899 - SO0160 0.41 -0.8 166,899 - SO0160 0.41 +0.7 166,943 + SO0160 0.44 +0.6 166,945 + SO0160 0.44 -0.8 166,960 + SO0160 0.45 +1.0 167,024 + SO0160 0.49 -0.8 167,037 + SO0160 0.50 +0.8 167,045 - SO0160 0.50 +5.2 167,047 + SO0160 0.51 +0.7 167,048 - SO0160 0.51 -1.9 167,048 - SO0160 0.51 -0.5 167,081 + SO0160 0.53 +0.5
Or see this region's nucleotide sequence