Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g174 and HP15_p187g175 are separated by 195 nucleotides HP15_p187g175 and HP15_p187g176 are separated by 148 nucleotides HP15_p187g176 and HP15_p187g177 are separated by 648 nucleotides
HP15_p187g174: HP15_p187g174 - protein containing Type IV pilus assembly PilZ domain, at 181,355 to 181,906
_p187g174
HP15_p187g175: HP15_p187g175 - conserved hypothetical protein, at 182,102 to 182,698
_p187g175
HP15_p187g176: HP15_p187g176 - conserved hypothetical protein, at 182,847 to 184,196
_p187g176
HP15_p187g177: HP15_p187g177 - carboxyl-terminal protease-like protein, at 184,845 to 186,347
_p187g177
Position (kb) 182
183
184
185 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 181.906 kb on - strand at 181.999 kb on + strand at 182.007 kb on - strand at 182.059 kb on + strand at 182.069 kb on + strand at 182.069 kb on + strand at 182.077 kb on - strand at 182.078 kb on + strand at 182.078 kb on + strand at 182.083 kb on + strand at 182.086 kb on - strand at 182.088 kb on + strand at 182.088 kb on + strand at 182.088 kb on + strand at 182.091 kb on - strand at 182.091 kb on - strand at 182.096 kb on - strand at 182.096 kb on - strand at 182.096 kb on - strand at 182.098 kb on - strand at 182.100 kb on + strand at 182.136 kb on + strand at 182.210 kb on + strand, within HP15_p187g175 at 182.210 kb on + strand, within HP15_p187g175 at 182.251 kb on - strand, within HP15_p187g175 at 182.497 kb on + strand, within HP15_p187g175 at 182.572 kb on + strand, within HP15_p187g175 at 182.578 kb on + strand, within HP15_p187g175 at 182.714 kb on + strand at 182.722 kb on - strand at 182.906 kb on + strand at 182.906 kb on + strand at 182.914 kb on - strand at 182.914 kb on - strand at 182.914 kb on - strand at 182.914 kb on - strand at 182.914 kb on - strand at 182.924 kb on - strand at 182.937 kb on - strand at 182.969 kb on + strand at 182.983 kb on - strand, within HP15_p187g176 at 183.010 kb on + strand, within HP15_p187g176 at 183.010 kb on - strand, within HP15_p187g176 at 183.011 kb on + strand, within HP15_p187g176 at 183.011 kb on + strand, within HP15_p187g176 at 183.054 kb on + strand, within HP15_p187g176 at 183.054 kb on + strand, within HP15_p187g176 at 183.059 kb on + strand, within HP15_p187g176 at 183.067 kb on - strand, within HP15_p187g176 at 183.072 kb on + strand, within HP15_p187g176 at 183.101 kb on - strand, within HP15_p187g176 at 183.149 kb on + strand, within HP15_p187g176 at 183.220 kb on + strand, within HP15_p187g176 at 183.220 kb on + strand, within HP15_p187g176 at 183.233 kb on - strand, within HP15_p187g176 at 183.269 kb on + strand, within HP15_p187g176 at 183.271 kb on + strand, within HP15_p187g176 at 183.271 kb on + strand, within HP15_p187g176 at 183.271 kb on + strand, within HP15_p187g176 at 183.277 kb on - strand, within HP15_p187g176 at 183.314 kb on - strand, within HP15_p187g176 at 183.320 kb on + strand, within HP15_p187g176 at 183.320 kb on + strand, within HP15_p187g176 at 183.328 kb on - strand, within HP15_p187g176 at 183.337 kb on - strand, within HP15_p187g176 at 183.380 kb on + strand, within HP15_p187g176 at 183.416 kb on + strand, within HP15_p187g176 at 183.416 kb on + strand, within HP15_p187g176 at 183.416 kb on + strand, within HP15_p187g176 at 183.424 kb on - strand, within HP15_p187g176 at 183.453 kb on - strand, within HP15_p187g176 at 183.468 kb on - strand, within HP15_p187g176 at 183.503 kb on - strand, within HP15_p187g176 at 183.534 kb on + strand, within HP15_p187g176 at 183.534 kb on + strand, within HP15_p187g176 at 183.582 kb on + strand, within HP15_p187g176 at 183.582 kb on - strand, within HP15_p187g176 at 183.592 kb on - strand, within HP15_p187g176 at 183.592 kb on - strand, within HP15_p187g176 at 183.638 kb on + strand, within HP15_p187g176 at 183.663 kb on + strand, within HP15_p187g176 at 183.704 kb on - strand, within HP15_p187g176 at 183.711 kb on + strand, within HP15_p187g176 at 183.745 kb on + strand, within HP15_p187g176 at 183.750 kb on + strand, within HP15_p187g176 at 183.820 kb on + strand, within HP15_p187g176 at 183.825 kb on + strand, within HP15_p187g176 at 183.825 kb on + strand, within HP15_p187g176 at 183.828 kb on - strand, within HP15_p187g176 at 183.828 kb on - strand, within HP15_p187g176 at 183.832 kb on + strand, within HP15_p187g176 at 183.833 kb on - strand, within HP15_p187g176 at 183.847 kb on + strand, within HP15_p187g176 at 183.855 kb on - strand, within HP15_p187g176 at 183.855 kb on - strand, within HP15_p187g176 at 183.855 kb on - strand, within HP15_p187g176 at 183.894 kb on - strand, within HP15_p187g176 at 183.946 kb on - strand, within HP15_p187g176 at 183.986 kb on + strand, within HP15_p187g176 at 184.009 kb on + strand, within HP15_p187g176 at 184.082 kb on + strand at 184.090 kb on - strand at 184.113 kb on + strand at 184.133 kb on - strand at 184.133 kb on - strand at 184.136 kb on + strand at 184.151 kb on + strand at 184.151 kb on + strand at 184.159 kb on - strand at 184.174 kb on - strand at 184.239 kb on + strand at 184.258 kb on - strand at 184.265 kb on + strand at 184.308 kb on + strand at 184.308 kb on + strand at 184.308 kb on + strand at 184.316 kb on - strand at 184.316 kb on - strand at 184.316 kb on - strand at 184.316 kb on - strand at 184.334 kb on - strand at 184.348 kb on - strand at 184.348 kb on - strand at 184.408 kb on + strand at 184.431 kb on - strand at 184.431 kb on - strand at 184.437 kb on - strand at 184.442 kb on + strand at 184.447 kb on + strand at 184.447 kb on + strand at 184.457 kb on + strand at 184.457 kb on + strand at 184.475 kb on - strand at 184.480 kb on - strand at 184.487 kb on + strand at 184.497 kb on + strand at 184.514 kb on + strand at 184.514 kb on - strand at 184.519 kb on - strand at 184.529 kb on - strand at 184.529 kb on - strand at 184.531 kb on - strand at 184.534 kb on + strand at 184.563 kb on + strand at 184.571 kb on - strand at 184.583 kb on + strand at 184.611 kb on - strand at 184.652 kb on + strand at 184.657 kb on + strand at 184.657 kb on + strand at 184.657 kb on + strand at 184.657 kb on + strand at 184.657 kb on + strand at 184.664 kb on + strand at 184.664 kb on + strand at 184.665 kb on - strand at 184.665 kb on - strand at 184.665 kb on - strand at 184.665 kb on - strand at 184.672 kb on - strand at 184.689 kb on - strand at 184.732 kb on + strand at 184.732 kb on + strand at 184.732 kb on + strand at 184.732 kb on + strand at 184.732 kb on + strand at 184.732 kb on + strand at 184.737 kb on + strand at 184.740 kb on - strand at 184.740 kb on - strand at 184.740 kb on - strand at 184.740 kb on - strand at 184.745 kb on - strand at 184.745 kb on - strand at 184.750 kb on - strand at 184.750 kb on - strand at 184.750 kb on - strand at 184.750 kb on - strand at 184.752 kb on + strand at 184.752 kb on + strand at 184.781 kb on - strand at 184.828 kb on - strand at 184.835 kb on + strand at 184.835 kb on + strand at 184.835 kb on + strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.913 kb on + strand at 184.926 kb on + strand at 184.970 kb on - strand at 184.970 kb on - strand at 184.970 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 181,906 - -0.5 181,999 + +1.0 182,007 - -0.5 182,059 + +1.1 182,069 + +0.7 182,069 + -0.7 182,077 - +1.7 182,078 + +1.4 182,078 + +0.0 182,083 + -2.1 182,086 - +0.0 182,088 + +1.6 182,088 + +1.3 182,088 + -0.8 182,091 - -0.4 182,091 - -0.2 182,096 - +0.6 182,096 - -0.5 182,096 - +1.7 182,098 - -1.0 182,100 + +0.9 182,136 + -0.9 182,210 + HP15_p187g175 0.18 -4.2 182,210 + HP15_p187g175 0.18 -1.9 182,251 - HP15_p187g175 0.25 -2.1 182,497 + HP15_p187g175 0.66 -1.4 182,572 + HP15_p187g175 0.79 -2.9 182,578 + HP15_p187g175 0.80 -0.2 182,714 + -1.8 182,722 - -1.3 182,906 + -3.2 182,906 + -4.8 182,914 - -2.9 182,914 - -3.2 182,914 - -0.5 182,914 - -2.6 182,914 - -2.4 182,924 - -1.6 182,937 - -1.8 182,969 + -0.1 182,983 - HP15_p187g176 0.10 -1.6 183,010 + HP15_p187g176 0.12 -1.6 183,010 - HP15_p187g176 0.12 -1.1 183,011 + HP15_p187g176 0.12 -1.9 183,011 + HP15_p187g176 0.12 -2.3 183,054 + HP15_p187g176 0.15 -0.6 183,054 + HP15_p187g176 0.15 -2.9 183,059 + HP15_p187g176 0.16 -2.6 183,067 - HP15_p187g176 0.16 -2.3 183,072 + HP15_p187g176 0.17 -1.3 183,101 - HP15_p187g176 0.19 -1.1 183,149 + HP15_p187g176 0.22 -1.5 183,220 + HP15_p187g176 0.28 -0.8 183,220 + HP15_p187g176 0.28 -4.5 183,233 - HP15_p187g176 0.29 -0.9 183,269 + HP15_p187g176 0.31 -3.1 183,271 + HP15_p187g176 0.31 -0.6 183,271 + HP15_p187g176 0.31 -1.2 183,271 + HP15_p187g176 0.31 -4.0 183,277 - HP15_p187g176 0.32 -2.5 183,314 - HP15_p187g176 0.35 -0.8 183,320 + HP15_p187g176 0.35 -1.6 183,320 + HP15_p187g176 0.35 -1.1 183,328 - HP15_p187g176 0.36 -2.9 183,337 - HP15_p187g176 0.36 -1.0 183,380 + HP15_p187g176 0.39 -1.1 183,416 + HP15_p187g176 0.42 -4.4 183,416 + HP15_p187g176 0.42 -2.2 183,416 + HP15_p187g176 0.42 -1.2 183,424 - HP15_p187g176 0.43 -1.7 183,453 - HP15_p187g176 0.45 -4.6 183,468 - HP15_p187g176 0.46 -2.7 183,503 - HP15_p187g176 0.49 -1.2 183,534 + HP15_p187g176 0.51 -0.3 183,534 + HP15_p187g176 0.51 -1.4 183,582 + HP15_p187g176 0.54 -0.6 183,582 - HP15_p187g176 0.54 -1.4 183,592 - HP15_p187g176 0.55 -3.5 183,592 - HP15_p187g176 0.55 -2.7 183,638 + HP15_p187g176 0.59 -1.7 183,663 + HP15_p187g176 0.60 -1.7 183,704 - HP15_p187g176 0.63 -1.7 183,711 + HP15_p187g176 0.64 -0.4 183,745 + HP15_p187g176 0.67 -0.6 183,750 + HP15_p187g176 0.67 +0.1 183,820 + HP15_p187g176 0.72 -2.4 183,825 + HP15_p187g176 0.72 -3.5 183,825 + HP15_p187g176 0.72 -0.6 183,828 - HP15_p187g176 0.73 -3.1 183,828 - HP15_p187g176 0.73 -2.2 183,832 + HP15_p187g176 0.73 -3.5 183,833 - HP15_p187g176 0.73 -1.9 183,847 + HP15_p187g176 0.74 -0.6 183,855 - HP15_p187g176 0.75 -2.6 183,855 - HP15_p187g176 0.75 -1.1 183,855 - HP15_p187g176 0.75 -3.2 183,894 - HP15_p187g176 0.78 -2.8 183,946 - HP15_p187g176 0.81 +0.2 183,986 + HP15_p187g176 0.84 -2.3 184,009 + HP15_p187g176 0.86 -3.2 184,082 + -1.2 184,090 - -1.6 184,113 + -2.1 184,133 - -1.2 184,133 - -1.1 184,136 + -1.2 184,151 + -4.7 184,151 + -1.8 184,159 - -1.6 184,174 - -0.3 184,239 + +1.2 184,258 - +0.2 184,265 + +1.3 184,308 + +1.4 184,308 + +2.1 184,308 + -0.5 184,316 - -0.2 184,316 - +1.7 184,316 - +1.7 184,316 - -0.2 184,334 - -0.4 184,348 - -1.7 184,348 - +1.9 184,408 + +1.8 184,431 - +0.1 184,431 - -0.1 184,437 - -0.7 184,442 + -0.1 184,447 + -0.6 184,447 + +0.3 184,457 + -0.5 184,457 + -0.4 184,475 - +1.0 184,480 - -0.9 184,487 + -1.0 184,497 + -0.4 184,514 + -0.4 184,514 - -0.6 184,519 - -0.7 184,529 - -0.2 184,529 - +1.7 184,531 - -1.0 184,534 + +1.6 184,563 + +1.5 184,571 - -0.3 184,583 + -1.5 184,611 - +1.5 184,652 + +1.7 184,657 + -1.0 184,657 + -0.9 184,657 + +0.3 184,657 + -0.6 184,657 + +1.1 184,664 + +1.6 184,664 + +0.2 184,665 - -0.0 184,665 - -0.7 184,665 - +1.5 184,665 - -0.3 184,672 - +0.2 184,689 - -1.0 184,732 + +0.2 184,732 + -0.1 184,732 + +2.1 184,732 + -0.7 184,732 + +1.2 184,732 + -0.1 184,737 + +0.4 184,740 - -0.8 184,740 - -0.7 184,740 - +1.1 184,740 - -0.7 184,745 - +1.5 184,745 - -1.2 184,750 - -0.2 184,750 - -0.9 184,750 - -0.7 184,750 - +1.0 184,752 + -0.6 184,752 + +1.3 184,781 - +1.8 184,828 - -1.1 184,835 + -0.6 184,835 + +0.7 184,835 + +1.9 184,843 - -0.6 184,843 - +1.1 184,843 - -0.8 184,843 - -0.0 184,913 + -0.3 184,926 + -1.3 184,970 - +1.6 184,970 - +1.0 184,970 - +1.8
Or see this region's nucleotide sequence