Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3886 and HP15_3887 overlap by 1 nucleotides HP15_3887 and HP15_3888 overlap by 4 nucleotides HP15_3888 and HP15_3889 are separated by 67 nucleotides
HP15_3886: HP15_3886 - energy transducer TonB, C-terminal region, at 4,116,607 to 4,117,347
_3886
HP15_3887: HP15_3887 - biopolymer transport protein ExbD/TolR, at 4,117,347 to 4,117,754
_3887
HP15_3888: HP15_3888 - ferric siderophore transport system inner membrane protein E, at 4,117,751 to 4,118,065
_3888
HP15_3889: HP15_3889 - MotA/TolQ/ExbB proton channel, at 4,118,133 to 4,118,921
_3889
Position (kb) 4117
4118
4119 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4116.822 kb on + strand, within HP15_3886 at 4116.899 kb on - strand, within HP15_3886 at 4116.899 kb on - strand, within HP15_3886 at 4116.947 kb on - strand, within HP15_3886 at 4116.994 kb on - strand, within HP15_3886 at 4117.046 kb on + strand, within HP15_3886 at 4117.054 kb on - strand, within HP15_3886 at 4117.060 kb on + strand, within HP15_3886 at 4117.076 kb on + strand, within HP15_3886 at 4117.190 kb on + strand, within HP15_3886 at 4117.217 kb on - strand, within HP15_3886 at 4117.221 kb on + strand, within HP15_3886 at 4117.238 kb on + strand, within HP15_3886 at 4117.246 kb on - strand, within HP15_3886 at 4117.246 kb on - strand, within HP15_3886 at 4117.257 kb on + strand, within HP15_3886 at 4117.344 kb on + strand at 4117.401 kb on + strand, within HP15_3887 at 4117.560 kb on - strand, within HP15_3887 at 4117.707 kb on + strand, within HP15_3887 at 4117.725 kb on + strand at 4117.733 kb on - strand at 4117.772 kb on - strand at 4117.893 kb on - strand, within HP15_3888 at 4118.053 kb on + strand at 4118.063 kb on + strand at 4118.072 kb on + strand at 4118.102 kb on - strand at 4118.125 kb on + strand at 4118.168 kb on - strand at 4118.391 kb on + strand, within HP15_3889 at 4118.399 kb on - strand, within HP15_3889 at 4118.413 kb on + strand, within HP15_3889 at 4118.439 kb on + strand, within HP15_3889 at 4118.491 kb on - strand, within HP15_3889 at 4118.496 kb on - strand, within HP15_3889 at 4118.496 kb on - strand, within HP15_3889 at 4118.538 kb on + strand, within HP15_3889 at 4118.544 kb on - strand, within HP15_3889 at 4118.546 kb on - strand, within HP15_3889 at 4118.571 kb on - strand, within HP15_3889 at 4118.627 kb on - strand, within HP15_3889 at 4118.694 kb on - strand, within HP15_3889 at 4118.784 kb on - strand, within HP15_3889 at 4118.893 kb on + strand at 4118.895 kb on + strand at 4118.895 kb on + strand at 4118.900 kb on + strand at 4118.906 kb on + strand at 4118.986 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 4,116,822 + HP15_3886 0.29 +0.9 4,116,899 - HP15_3886 0.39 -1.0 4,116,899 - HP15_3886 0.39 -1.0 4,116,947 - HP15_3886 0.46 -1.1 4,116,994 - HP15_3886 0.52 -1.5 4,117,046 + HP15_3886 0.59 -0.5 4,117,054 - HP15_3886 0.60 +0.6 4,117,060 + HP15_3886 0.61 +0.8 4,117,076 + HP15_3886 0.63 -0.5 4,117,190 + HP15_3886 0.79 -1.0 4,117,217 - HP15_3886 0.82 -0.9 4,117,221 + HP15_3886 0.83 +0.0 4,117,238 + HP15_3886 0.85 +1.1 4,117,246 - HP15_3886 0.86 -1.1 4,117,246 - HP15_3886 0.86 -0.5 4,117,257 + HP15_3886 0.88 -0.7 4,117,344 + +1.0 4,117,401 + HP15_3887 0.13 -1.6 4,117,560 - HP15_3887 0.52 -0.5 4,117,707 + HP15_3887 0.88 -0.9 4,117,725 + -1.3 4,117,733 - +0.4 4,117,772 - +1.2 4,117,893 - HP15_3888 0.45 -1.5 4,118,053 + +0.3 4,118,063 + -0.4 4,118,072 + +0.4 4,118,102 - +0.3 4,118,125 + -0.7 4,118,168 - -0.5 4,118,391 + HP15_3889 0.33 -0.9 4,118,399 - HP15_3889 0.34 -2.7 4,118,413 + HP15_3889 0.35 -1.2 4,118,439 + HP15_3889 0.39 -1.2 4,118,491 - HP15_3889 0.45 +0.8 4,118,496 - HP15_3889 0.46 -0.8 4,118,496 - HP15_3889 0.46 +1.8 4,118,538 + HP15_3889 0.51 -0.5 4,118,544 - HP15_3889 0.52 -0.9 4,118,546 - HP15_3889 0.52 -0.9 4,118,571 - HP15_3889 0.56 -1.9 4,118,627 - HP15_3889 0.63 +0.8 4,118,694 - HP15_3889 0.71 +1.2 4,118,784 - HP15_3889 0.83 -0.9 4,118,893 + +0.6 4,118,895 + +0.5 4,118,895 + +0.6 4,118,900 + -0.0 4,118,906 + -1.6 4,118,986 + -0.4
Or see this region's nucleotide sequence