Strain Fitness in Marinobacter adhaerens HP15 around HP15_3801

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3800 and HP15_3801 are separated by 88 nucleotidesHP15_3801 and HP15_3802 are separated by 3 nucleotidesHP15_3802 and HP15_3803 are separated by 180 nucleotides HP15_3800: HP15_3800 - isocitrate dehydrogenase, NADP-dependent, at 4,024,430 to 4,026,673 _3800 HP15_3801: HP15_3801 - sodium/hydrogen exchanger, at 4,026,762 to 4,027,955 _3801 HP15_3802: HP15_3802 - conserved hypothetical protein CHP00011, at 4,027,959 to 4,028,429 _3802 HP15_3803: HP15_3803 - GGDEF domain-like protein, at 4,028,610 to 4,029,839 _3803 Position (kb) 4026 4027 4028Strain fitness (log2 ratio) -2 -1 0 1 2at 4026.670 kb on - strandat 4026.680 kb on - strandat 4026.822 kb on + strandat 4027.063 kb on + strand, within HP15_3801at 4027.073 kb on + strand, within HP15_3801at 4027.081 kb on - strand, within HP15_3801at 4027.160 kb on - strand, within HP15_3801at 4027.232 kb on + strand, within HP15_3801at 4027.307 kb on + strand, within HP15_3801at 4027.312 kb on + strand, within HP15_3801at 4027.312 kb on + strand, within HP15_3801at 4027.350 kb on + strand, within HP15_3801at 4027.459 kb on + strand, within HP15_3801at 4027.534 kb on + strand, within HP15_3801at 4027.552 kb on - strand, within HP15_3801at 4027.645 kb on + strand, within HP15_3801at 4027.688 kb on - strand, within HP15_3801at 4027.704 kb on + strand, within HP15_3801at 4027.825 kb on + strand, within HP15_3801at 4027.856 kb on + strandat 4027.864 kb on - strandat 4027.879 kb on + strandat 4027.921 kb on - strandat 4027.958 kb on - strandat 4028.070 kb on + strand, within HP15_3802at 4028.070 kb on + strand, within HP15_3802at 4028.078 kb on - strand, within HP15_3802at 4028.114 kb on + strand, within HP15_3802at 4028.138 kb on + strand, within HP15_3802at 4028.138 kb on + strand, within HP15_3802at 4028.141 kb on - strand, within HP15_3802at 4028.312 kb on - strand, within HP15_3802at 4028.375 kb on + strand, within HP15_3802at 4028.461 kb on + strandat 4028.469 kb on - strandat 4028.501 kb on - strandat 4028.672 kb on + strandat 4028.679 kb on + strandat 4028.680 kb on - strandat 4028.687 kb on - strandat 4028.687 kb on - strandat 4028.877 kb on - strand, within HP15_3803at 4028.888 kb on + strand, within HP15_3803

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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4,026,670 - -0.0
4,026,680 - +1.2
4,026,822 + -0.3
4,027,063 + HP15_3801 0.25 -0.3
4,027,073 + HP15_3801 0.26 -0.1
4,027,081 - HP15_3801 0.27 +1.8
4,027,160 - HP15_3801 0.33 +0.4
4,027,232 + HP15_3801 0.39 +1.8
4,027,307 + HP15_3801 0.46 +0.0
4,027,312 + HP15_3801 0.46 -0.1
4,027,312 + HP15_3801 0.46 +1.0
4,027,350 + HP15_3801 0.49 -0.3
4,027,459 + HP15_3801 0.58 +0.1
4,027,534 + HP15_3801 0.65 +1.8
4,027,552 - HP15_3801 0.66 +0.5
4,027,645 + HP15_3801 0.74 -0.1
4,027,688 - HP15_3801 0.78 +1.6
4,027,704 + HP15_3801 0.79 +2.0
4,027,825 + HP15_3801 0.89 +1.2
4,027,856 + +1.9
4,027,864 - -0.5
4,027,879 + +1.9
4,027,921 - +1.5
4,027,958 - +0.1
4,028,070 + HP15_3802 0.24 +1.8
4,028,070 + HP15_3802 0.24 +0.2
4,028,078 - HP15_3802 0.25 -1.5
4,028,114 + HP15_3802 0.33 -0.1
4,028,138 + HP15_3802 0.38 +0.4
4,028,138 + HP15_3802 0.38 -0.7
4,028,141 - HP15_3802 0.39 +1.0
4,028,312 - HP15_3802 0.75 -1.9
4,028,375 + HP15_3802 0.88 -0.6
4,028,461 + +2.3
4,028,469 - -0.3
4,028,501 - -0.3
4,028,672 + -1.0
4,028,679 + -0.4
4,028,680 - -1.0
4,028,687 - -0.4
4,028,687 - -0.8
4,028,877 - HP15_3803 0.22 -1.2
4,028,888 + HP15_3803 0.23 +1.6

Or see this region's nucleotide sequence