Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3193 and HP15_3194 are separated by 27 nucleotides HP15_3194 and HP15_3195 are separated by 12 nucleotides HP15_3195 and HP15_3196 are separated by 88 nucleotides HP15_3196 and HP15_3197 are separated by 11 nucleotides
HP15_3193: HP15_3193 - ubiquinone biosynthesis protein UbiB, at 3,347,770 to 3,349,413
_3193
HP15_3194: HP15_3194 - phosphoribosyl-AMP cyclohydrolase, at 3,349,441 to 3,349,857
_3194
HP15_3195: HP15_3195 - phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) , at 3,349,870 to 3,350,199
_3195
HP15_3196: HP15_3196 - twin-arginine translocation protein TatA/E, at 3,350,288 to 3,350,527
_3196
HP15_3197: HP15_3197 - twin-arginine translocation subgoup, at 3,350,539 to 3,351,012
_3197
Position (kb)
3349
3350 Strain fitness (log2 ratio)
-1
0
1 at 3349.525 kb on + strand, within HP15_3194 at 3349.609 kb on + strand, within HP15_3194 at 3349.658 kb on + strand, within HP15_3194 at 3349.830 kb on + strand at 3349.840 kb on + strand at 3349.851 kb on + strand at 3349.934 kb on + strand, within HP15_3195 at 3349.964 kb on - strand, within HP15_3195 at 3350.056 kb on - strand, within HP15_3195 at 3350.201 kb on + strand at 3350.523 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 3,349,525 + HP15_3194 0.20 -1.3 3,349,609 + HP15_3194 0.40 +0.1 3,349,658 + HP15_3194 0.52 +0.3 3,349,830 + +1.7 3,349,840 + -0.5 3,349,851 + +1.4 3,349,934 + HP15_3195 0.19 -1.0 3,349,964 - HP15_3195 0.28 -0.6 3,350,056 - HP15_3195 0.56 -1.2 3,350,201 + +0.1 3,350,523 + -0.3
Or see this region's nucleotide sequence