Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2864 and HP15_2865 are separated by 449 nucleotides HP15_2865 and HP15_2866 are separated by 229 nucleotides
HP15_2864: HP15_2864 - cis-3-chloroacrylic acid dehalogenase, at 3,002,331 to 3,002,762
_2864
HP15_2865: HP15_2865 - hypothetical protein, at 3,003,212 to 3,003,325
_2865
HP15_2866: HP15_2866 - hypothetical protein, at 3,003,555 to 3,004,622
_2866
Position (kb)
3003
3004 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 3002.285 kb on - strand at 3002.311 kb on + strand at 3002.319 kb on - strand at 3002.336 kb on + strand at 3002.366 kb on - strand at 3002.399 kb on + strand, within HP15_2864 at 3002.421 kb on + strand, within HP15_2864 at 3002.501 kb on + strand, within HP15_2864 at 3002.554 kb on - strand, within HP15_2864 at 3002.554 kb on - strand, within HP15_2864 at 3002.589 kb on - strand, within HP15_2864 at 3002.615 kb on + strand, within HP15_2864 at 3002.849 kb on - strand at 3002.874 kb on + strand at 3002.922 kb on + strand at 3002.971 kb on + strand at 3002.979 kb on - strand at 3003.117 kb on + strand at 3003.125 kb on - strand at 3003.230 kb on - strand, within HP15_2865 at 3003.230 kb on - strand, within HP15_2865 at 3003.239 kb on - strand, within HP15_2865 at 3003.411 kb on + strand at 3003.458 kb on - strand at 3003.467 kb on - strand at 3003.470 kb on + strand at 3003.481 kb on + strand at 3003.482 kb on - strand at 3003.599 kb on + strand at 3003.666 kb on - strand, within HP15_2866 at 3003.736 kb on + strand, within HP15_2866 at 3003.746 kb on - strand, within HP15_2866 at 3003.748 kb on + strand, within HP15_2866 at 3003.748 kb on + strand, within HP15_2866 at 3003.810 kb on + strand, within HP15_2866 at 3003.945 kb on - strand, within HP15_2866 at 3003.962 kb on - strand, within HP15_2866 at 3004.124 kb on + strand, within HP15_2866 at 3004.124 kb on + strand, within HP15_2866 at 3004.137 kb on + strand, within HP15_2866 at 3004.147 kb on - strand, within HP15_2866 at 3004.164 kb on + strand, within HP15_2866 at 3004.164 kb on + strand, within HP15_2866 at 3004.174 kb on + strand, within HP15_2866 at 3004.249 kb on - strand, within HP15_2866
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 3,002,285 - +0.6 3,002,311 + +0.2 3,002,319 - +0.1 3,002,336 + -0.4 3,002,366 - -0.1 3,002,399 + HP15_2864 0.16 +2.3 3,002,421 + HP15_2864 0.21 +1.8 3,002,501 + HP15_2864 0.39 +2.0 3,002,554 - HP15_2864 0.52 -0.4 3,002,554 - HP15_2864 0.52 -0.4 3,002,589 - HP15_2864 0.60 +0.4 3,002,615 + HP15_2864 0.66 +1.8 3,002,849 - -0.5 3,002,874 + +1.7 3,002,922 + -0.4 3,002,971 + -0.8 3,002,979 - +1.5 3,003,117 + +1.3 3,003,125 - +4.1 3,003,230 - HP15_2865 0.16 +1.5 3,003,230 - HP15_2865 0.16 -0.8 3,003,239 - HP15_2865 0.24 -0.7 3,003,411 + -0.5 3,003,458 - +1.7 3,003,467 - +1.5 3,003,470 + -0.1 3,003,481 + -0.5 3,003,482 - +1.9 3,003,599 + -0.4 3,003,666 - HP15_2866 0.10 +1.6 3,003,736 + HP15_2866 0.17 -0.1 3,003,746 - HP15_2866 0.18 +0.1 3,003,748 + HP15_2866 0.18 +1.5 3,003,748 + HP15_2866 0.18 -0.8 3,003,810 + HP15_2866 0.24 -0.2 3,003,945 - HP15_2866 0.37 -0.1 3,003,962 - HP15_2866 0.38 +0.3 3,004,124 + HP15_2866 0.53 -0.7 3,004,124 + HP15_2866 0.53 +1.6 3,004,137 + HP15_2866 0.54 -0.2 3,004,147 - HP15_2866 0.55 +0.4 3,004,164 + HP15_2866 0.57 -0.8 3,004,164 + HP15_2866 0.57 -1.7 3,004,174 + HP15_2866 0.58 +1.8 3,004,249 - HP15_2866 0.65 -1.1
Or see this region's nucleotide sequence