Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2860 and HP15_2861 are separated by 245 nucleotides HP15_2861 and HP15_2862 are separated by 68 nucleotides HP15_2862 and HP15_2863 are separated by 116 nucleotides
HP15_2860: HP15_2860 - methyltransferase, at 2,999,152 to 2,999,862
_2860
HP15_2861: HP15_2861 - conserved hypothetical protein, at 3,000,108 to 3,000,770
_2861
HP15_2862: HP15_2862 - conserved hypothetical protein, at 3,000,839 to 3,001,144
_2862
HP15_2863: HP15_2863 - peptidase S15, at 3,001,261 to 3,002,151
_2863
Position (kb)
3000
3001
3002 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2999.896 kb on + strand at 2999.911 kb on - strand at 3000.053 kb on - strand at 3000.099 kb on - strand at 3000.101 kb on + strand at 3000.106 kb on + strand at 3000.138 kb on - strand at 3000.243 kb on - strand, within HP15_2861 at 3000.261 kb on - strand, within HP15_2861 at 3000.449 kb on + strand, within HP15_2861 at 3000.556 kb on + strand, within HP15_2861 at 3000.563 kb on + strand, within HP15_2861 at 3000.636 kb on - strand, within HP15_2861 at 3000.661 kb on - strand, within HP15_2861 at 3000.773 kb on - strand at 3000.793 kb on + strand at 3000.819 kb on + strand at 3000.829 kb on + strand at 3000.837 kb on - strand at 3000.845 kb on + strand at 3000.923 kb on - strand, within HP15_2862 at 3001.108 kb on + strand, within HP15_2862 at 3001.156 kb on + strand at 3001.177 kb on + strand at 3001.182 kb on + strand at 3001.185 kb on - strand at 3001.220 kb on + strand at 3001.245 kb on + strand at 3001.266 kb on + strand at 3001.309 kb on + strand at 3001.309 kb on + strand at 3001.309 kb on + strand at 3001.309 kb on + strand at 3001.317 kb on - strand at 3001.317 kb on - strand at 3001.357 kb on - strand, within HP15_2863 at 3001.370 kb on - strand, within HP15_2863 at 3001.415 kb on + strand, within HP15_2863 at 3001.435 kb on - strand, within HP15_2863 at 3001.440 kb on - strand, within HP15_2863 at 3001.440 kb on - strand, within HP15_2863 at 3001.441 kb on - strand, within HP15_2863 at 3001.451 kb on - strand, within HP15_2863 at 3001.557 kb on + strand, within HP15_2863 at 3001.574 kb on + strand, within HP15_2863 at 3001.635 kb on - strand, within HP15_2863 at 3001.672 kb on + strand, within HP15_2863 at 3001.772 kb on + strand, within HP15_2863 at 3001.853 kb on + strand, within HP15_2863 at 3001.853 kb on + strand, within HP15_2863 at 3001.853 kb on + strand, within HP15_2863 at 3001.903 kb on - strand, within HP15_2863 at 3002.034 kb on + strand, within HP15_2863 at 3002.070 kb on - strand at 3002.102 kb on + strand at 3002.110 kb on + strand at 3002.117 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 2,999,896 + -0.7 2,999,911 - +0.4 3,000,053 - -0.6 3,000,099 - -1.5 3,000,101 + -0.4 3,000,106 + -0.4 3,000,138 - -0.5 3,000,243 - HP15_2861 0.20 -0.5 3,000,261 - HP15_2861 0.23 -1.1 3,000,449 + HP15_2861 0.51 +1.7 3,000,556 + HP15_2861 0.68 -0.4 3,000,563 + HP15_2861 0.69 +1.0 3,000,636 - HP15_2861 0.80 +1.9 3,000,661 - HP15_2861 0.83 +0.2 3,000,773 - -1.3 3,000,793 + -0.5 3,000,819 + +1.5 3,000,829 + +1.6 3,000,837 - +1.9 3,000,845 + -0.6 3,000,923 - HP15_2862 0.27 -1.3 3,001,108 + HP15_2862 0.88 -1.3 3,001,156 + +1.4 3,001,177 + +0.1 3,001,182 + -2.0 3,001,185 - +0.2 3,001,220 + +1.2 3,001,245 + +0.1 3,001,266 + -0.6 3,001,309 + +0.9 3,001,309 + +1.1 3,001,309 + -0.2 3,001,309 + +1.8 3,001,317 - -0.6 3,001,317 - +0.2 3,001,357 - HP15_2863 0.11 +1.8 3,001,370 - HP15_2863 0.12 +0.1 3,001,415 + HP15_2863 0.17 +0.1 3,001,435 - HP15_2863 0.20 -1.1 3,001,440 - HP15_2863 0.20 -0.4 3,001,440 - HP15_2863 0.20 -0.6 3,001,441 - HP15_2863 0.20 +0.3 3,001,451 - HP15_2863 0.21 -0.7 3,001,557 + HP15_2863 0.33 -0.2 3,001,574 + HP15_2863 0.35 +0.9 3,001,635 - HP15_2863 0.42 -0.6 3,001,672 + HP15_2863 0.46 -0.4 3,001,772 + HP15_2863 0.57 -0.0 3,001,853 + HP15_2863 0.66 -0.4 3,001,853 + HP15_2863 0.66 -0.0 3,001,853 + HP15_2863 0.66 +0.2 3,001,903 - HP15_2863 0.72 +0.3 3,002,034 + HP15_2863 0.87 -1.2 3,002,070 - -0.2 3,002,102 + +1.5 3,002,110 + -0.6 3,002,117 - -0.5
Or see this region's nucleotide sequence