Strain Fitness in Marinobacter adhaerens HP15 around HP15_2862

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2860 and HP15_2861 are separated by 245 nucleotidesHP15_2861 and HP15_2862 are separated by 68 nucleotidesHP15_2862 and HP15_2863 are separated by 116 nucleotides HP15_2860: HP15_2860 - methyltransferase, at 2,999,152 to 2,999,862 _2860 HP15_2861: HP15_2861 - conserved hypothetical protein, at 3,000,108 to 3,000,770 _2861 HP15_2862: HP15_2862 - conserved hypothetical protein, at 3,000,839 to 3,001,144 _2862 HP15_2863: HP15_2863 - peptidase S15, at 3,001,261 to 3,002,151 _2863 Position (kb) 3000 3001 3002Strain fitness (log2 ratio) -2 -1 0 1 2at 2999.896 kb on + strandat 2999.911 kb on - strandat 3000.053 kb on - strandat 3000.099 kb on - strandat 3000.101 kb on + strandat 3000.106 kb on + strandat 3000.138 kb on - strandat 3000.243 kb on - strand, within HP15_2861at 3000.261 kb on - strand, within HP15_2861at 3000.449 kb on + strand, within HP15_2861at 3000.556 kb on + strand, within HP15_2861at 3000.563 kb on + strand, within HP15_2861at 3000.636 kb on - strand, within HP15_2861at 3000.661 kb on - strand, within HP15_2861at 3000.773 kb on - strandat 3000.793 kb on + strandat 3000.819 kb on + strandat 3000.829 kb on + strandat 3000.837 kb on - strandat 3000.845 kb on + strandat 3000.923 kb on - strand, within HP15_2862at 3001.108 kb on + strand, within HP15_2862at 3001.156 kb on + strandat 3001.177 kb on + strandat 3001.182 kb on + strandat 3001.185 kb on - strandat 3001.220 kb on + strandat 3001.245 kb on + strandat 3001.266 kb on + strandat 3001.309 kb on + strandat 3001.309 kb on + strandat 3001.309 kb on + strandat 3001.309 kb on + strandat 3001.317 kb on - strandat 3001.317 kb on - strandat 3001.357 kb on - strand, within HP15_2863at 3001.370 kb on - strand, within HP15_2863at 3001.415 kb on + strand, within HP15_2863at 3001.435 kb on - strand, within HP15_2863at 3001.440 kb on - strand, within HP15_2863at 3001.440 kb on - strand, within HP15_2863at 3001.441 kb on - strand, within HP15_2863at 3001.451 kb on - strand, within HP15_2863at 3001.557 kb on + strand, within HP15_2863at 3001.574 kb on + strand, within HP15_2863at 3001.635 kb on - strand, within HP15_2863at 3001.672 kb on + strand, within HP15_2863at 3001.772 kb on + strand, within HP15_2863at 3001.853 kb on + strand, within HP15_2863at 3001.853 kb on + strand, within HP15_2863at 3001.853 kb on + strand, within HP15_2863at 3001.903 kb on - strand, within HP15_2863at 3002.034 kb on + strand, within HP15_2863at 3002.070 kb on - strandat 3002.102 kb on + strandat 3002.110 kb on + strandat 3002.117 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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2,999,896 + -0.7
2,999,911 - +0.4
3,000,053 - -0.6
3,000,099 - -1.5
3,000,101 + -0.4
3,000,106 + -0.4
3,000,138 - -0.5
3,000,243 - HP15_2861 0.20 -0.5
3,000,261 - HP15_2861 0.23 -1.1
3,000,449 + HP15_2861 0.51 +1.7
3,000,556 + HP15_2861 0.68 -0.4
3,000,563 + HP15_2861 0.69 +1.0
3,000,636 - HP15_2861 0.80 +1.9
3,000,661 - HP15_2861 0.83 +0.2
3,000,773 - -1.3
3,000,793 + -0.5
3,000,819 + +1.5
3,000,829 + +1.6
3,000,837 - +1.9
3,000,845 + -0.6
3,000,923 - HP15_2862 0.27 -1.3
3,001,108 + HP15_2862 0.88 -1.3
3,001,156 + +1.4
3,001,177 + +0.1
3,001,182 + -2.0
3,001,185 - +0.2
3,001,220 + +1.2
3,001,245 + +0.1
3,001,266 + -0.6
3,001,309 + +0.9
3,001,309 + +1.1
3,001,309 + -0.2
3,001,309 + +1.8
3,001,317 - -0.6
3,001,317 - +0.2
3,001,357 - HP15_2863 0.11 +1.8
3,001,370 - HP15_2863 0.12 +0.1
3,001,415 + HP15_2863 0.17 +0.1
3,001,435 - HP15_2863 0.20 -1.1
3,001,440 - HP15_2863 0.20 -0.4
3,001,440 - HP15_2863 0.20 -0.6
3,001,441 - HP15_2863 0.20 +0.3
3,001,451 - HP15_2863 0.21 -0.7
3,001,557 + HP15_2863 0.33 -0.2
3,001,574 + HP15_2863 0.35 +0.9
3,001,635 - HP15_2863 0.42 -0.6
3,001,672 + HP15_2863 0.46 -0.4
3,001,772 + HP15_2863 0.57 -0.0
3,001,853 + HP15_2863 0.66 -0.4
3,001,853 + HP15_2863 0.66 -0.0
3,001,853 + HP15_2863 0.66 +0.2
3,001,903 - HP15_2863 0.72 +0.3
3,002,034 + HP15_2863 0.87 -1.2
3,002,070 - -0.2
3,002,102 + +1.5
3,002,110 + -0.6
3,002,117 - -0.5

Or see this region's nucleotide sequence