Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2676 and HP15_2677 are separated by 35 nucleotides HP15_2677 and HP15_2678 are separated by 78 nucleotides HP15_2678 and HP15_2679 are separated by 179 nucleotides
HP15_2676: HP15_2676 - proton/sodium-glutamate symport protein, at 2,824,961 to 2,826,241
_2676
HP15_2677: HP15_2677 - conserved hypothetical protein, secreted, at 2,826,277 to 2,826,753
_2677
HP15_2678: HP15_2678 - shikimate kinase, at 2,826,832 to 2,827,356
_2678
HP15_2679: HP15_2679 - transglycosylase SLT domain protein, at 2,827,536 to 2,828,237
_2679
Position (kb)
2826
2827 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2825.303 kb on + strand, within HP15_2676 at 2825.335 kb on - strand, within HP15_2676 at 2825.374 kb on + strand, within HP15_2676 at 2825.374 kb on + strand, within HP15_2676 at 2825.382 kb on - strand, within HP15_2676 at 2825.382 kb on - strand, within HP15_2676 at 2825.403 kb on - strand at 2825.477 kb on - strand, within HP15_2676 at 2825.519 kb on - strand, within HP15_2676 at 2825.552 kb on + strand, within HP15_2676 at 2825.560 kb on - strand, within HP15_2676 at 2825.726 kb on + strand, within HP15_2676 at 2825.828 kb on + strand, within HP15_2676 at 2825.834 kb on - strand, within HP15_2676 at 2825.846 kb on - strand, within HP15_2676 at 2825.914 kb on + strand, within HP15_2676 at 2825.917 kb on - strand, within HP15_2676 at 2825.917 kb on - strand, within HP15_2676 at 2825.922 kb on - strand, within HP15_2676 at 2825.922 kb on - strand, within HP15_2676 at 2826.064 kb on + strand, within HP15_2676 at 2826.101 kb on - strand, within HP15_2676 at 2826.103 kb on + strand, within HP15_2676 at 2826.103 kb on + strand, within HP15_2676 at 2826.111 kb on - strand, within HP15_2676 at 2826.111 kb on - strand, within HP15_2676 at 2826.143 kb on + strand at 2826.283 kb on - strand at 2826.307 kb on + strand at 2826.610 kb on - strand, within HP15_2677 at 2826.638 kb on - strand, within HP15_2677 at 2826.688 kb on - strand, within HP15_2677 at 2826.690 kb on + strand, within HP15_2677 at 2826.864 kb on - strand at 2827.034 kb on - strand, within HP15_2678 at 2827.064 kb on + strand, within HP15_2678 at 2827.082 kb on - strand, within HP15_2678 at 2827.090 kb on + strand, within HP15_2678 at 2827.191 kb on + strand, within HP15_2678 at 2827.470 kb on - strand at 2827.544 kb on + strand at 2827.554 kb on + strand at 2827.677 kb on - strand, within HP15_2679 at 2827.748 kb on - strand, within HP15_2679 at 2827.750 kb on + strand, within HP15_2679
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 2,825,303 + HP15_2676 0.27 +1.7 2,825,335 - HP15_2676 0.29 -0.4 2,825,374 + HP15_2676 0.32 +0.2 2,825,374 + HP15_2676 0.32 -0.2 2,825,382 - HP15_2676 0.33 -0.1 2,825,382 - HP15_2676 0.33 +2.1 2,825,403 - +0.5 2,825,477 - HP15_2676 0.40 +2.5 2,825,519 - HP15_2676 0.44 -0.2 2,825,552 + HP15_2676 0.46 +0.1 2,825,560 - HP15_2676 0.47 -0.4 2,825,726 + HP15_2676 0.60 -0.8 2,825,828 + HP15_2676 0.68 +1.4 2,825,834 - HP15_2676 0.68 +1.4 2,825,846 - HP15_2676 0.69 +2.0 2,825,914 + HP15_2676 0.74 +0.5 2,825,917 - HP15_2676 0.75 +1.9 2,825,917 - HP15_2676 0.75 +1.6 2,825,922 - HP15_2676 0.75 -1.0 2,825,922 - HP15_2676 0.75 +2.3 2,826,064 + HP15_2676 0.86 +1.4 2,826,101 - HP15_2676 0.89 -0.0 2,826,103 + HP15_2676 0.89 -0.7 2,826,103 + HP15_2676 0.89 -0.3 2,826,111 - HP15_2676 0.90 -0.7 2,826,111 - HP15_2676 0.90 -0.1 2,826,143 + +0.4 2,826,283 - -0.4 2,826,307 + -0.2 2,826,610 - HP15_2677 0.70 -2.0 2,826,638 - HP15_2677 0.76 -0.7 2,826,688 - HP15_2677 0.86 +0.2 2,826,690 + HP15_2677 0.87 -1.4 2,826,864 - -0.7 2,827,034 - HP15_2678 0.38 +1.7 2,827,064 + HP15_2678 0.44 -0.9 2,827,082 - HP15_2678 0.48 -0.1 2,827,090 + HP15_2678 0.49 -0.2 2,827,191 + HP15_2678 0.68 -0.5 2,827,470 - +2.2 2,827,544 + +1.5 2,827,554 + -0.6 2,827,677 - HP15_2679 0.20 -1.2 2,827,748 - HP15_2679 0.30 -1.5 2,827,750 + HP15_2679 0.30 -0.3
Or see this region's nucleotide sequence