Strain Fitness in Marinobacter adhaerens HP15 around HP15_2660

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2659 and HP15_2660 overlap by 1 nucleotidesHP15_2660 and HP15_2661 overlap by 4 nucleotides HP15_2659: HP15_2659 - Citrate uptake transporter, large transmembrane component TctA (from data), at 2,808,744 to 2,810,270 _2659 HP15_2660: HP15_2660 - Citrate uptake transporter, small transmembrane component TctB (from data), at 2,810,270 to 2,810,716 _2660 HP15_2661: HP15_2661 - Citrate uptake transporter, substrate-binding component TctC (from data), at 2,810,713 to 2,811,699 _2661 Position (kb) 2810 2811Strain fitness (log2 ratio) -1 0 1 2at 2809.357 kb on + strand, within HP15_2659at 2809.676 kb on + strand, within HP15_2659at 2809.843 kb on - strand, within HP15_2659at 2809.847 kb on + strand, within HP15_2659at 2810.390 kb on - strand, within HP15_2660at 2810.416 kb on + strand, within HP15_2660at 2810.647 kb on - strand, within HP15_2660at 2810.852 kb on - strand, within HP15_2661at 2811.042 kb on + strand, within HP15_2661at 2811.253 kb on + strand, within HP15_2661at 2811.431 kb on + strand, within HP15_2661at 2811.525 kb on + strand, within HP15_2661at 2811.692 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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2,809,357 + HP15_2659 0.40 +1.7
2,809,676 + HP15_2659 0.61 +1.4
2,809,843 - HP15_2659 0.72 +1.8
2,809,847 + HP15_2659 0.72 +1.6
2,810,390 - HP15_2660 0.27 -0.1
2,810,416 + HP15_2660 0.33 -0.3
2,810,647 - HP15_2660 0.84 -0.6
2,810,852 - HP15_2661 0.14 -0.9
2,811,042 + HP15_2661 0.33 +1.8
2,811,253 + HP15_2661 0.55 +1.9
2,811,431 + HP15_2661 0.73 +0.7
2,811,525 + HP15_2661 0.82 -0.1
2,811,692 + +1.0

Or see this region's nucleotide sequence