Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2653 and HP15_2654 are separated by 84 nucleotides HP15_2654 and HP15_2655 overlap by 24 nucleotides HP15_2655 and HP15_2656 are separated by 28 nucleotides
HP15_2653: HP15_2653 - transcriptional regulator, LysR family protein, at 2,802,889 to 2,803,797
_2653
HP15_2654: HP15_2654 - hypothetical protein, at 2,803,882 to 2,804,007
_2654
HP15_2655: HP15_2655 - methylmalonate-semialdehyde dehydrogenase, at 2,803,984 to 2,805,495
_2655
HP15_2656: HP15_2656 - glucose-methanol-choline oxidoreductase, at 2,805,524 to 2,807,194
_2656
Position (kb)
2803
2804
2805
2806 Strain fitness (log2 ratio)
-1
0
1
2 at 2803.082 kb on + strand, within HP15_2653 at 2803.090 kb on - strand, within HP15_2653 at 2803.092 kb on + strand, within HP15_2653 at 2803.107 kb on + strand, within HP15_2653 at 2803.130 kb on - strand, within HP15_2653 at 2803.160 kb on - strand, within HP15_2653 at 2803.163 kb on + strand, within HP15_2653 at 2803.171 kb on - strand, within HP15_2653 at 2803.185 kb on - strand, within HP15_2653 at 2803.294 kb on + strand, within HP15_2653 at 2803.382 kb on + strand, within HP15_2653 at 2803.382 kb on + strand, within HP15_2653 at 2803.382 kb on + strand, within HP15_2653 at 2803.390 kb on - strand, within HP15_2653 at 2803.390 kb on - strand, within HP15_2653 at 2803.392 kb on + strand, within HP15_2653 at 2803.409 kb on + strand, within HP15_2653 at 2803.415 kb on + strand, within HP15_2653 at 2803.460 kb on - strand, within HP15_2653 at 2803.462 kb on + strand, within HP15_2653 at 2803.635 kb on - strand, within HP15_2653 at 2803.788 kb on - strand at 2804.236 kb on - strand, within HP15_2655 at 2804.370 kb on - strand, within HP15_2655 at 2804.495 kb on + strand, within HP15_2655 at 2804.495 kb on + strand, within HP15_2655 at 2804.508 kb on - strand, within HP15_2655 at 2804.775 kb on + strand, within HP15_2655 at 2804.911 kb on - strand, within HP15_2655 at 2804.974 kb on + strand, within HP15_2655 at 2804.993 kb on + strand, within HP15_2655 at 2805.017 kb on + strand, within HP15_2655 at 2805.017 kb on + strand, within HP15_2655 at 2805.052 kb on + strand, within HP15_2655 at 2805.160 kb on + strand, within HP15_2655 at 2805.168 kb on - strand, within HP15_2655 at 2805.168 kb on - strand, within HP15_2655 at 2805.168 kb on - strand, within HP15_2655 at 2805.168 kb on - strand, within HP15_2655 at 2805.168 kb on - strand, within HP15_2655 at 2805.299 kb on - strand, within HP15_2655 at 2805.446 kb on - strand at 2805.672 kb on + strand at 2805.753 kb on + strand, within HP15_2656 at 2805.847 kb on + strand, within HP15_2656 at 2805.861 kb on - strand, within HP15_2656 at 2805.985 kb on - strand, within HP15_2656 at 2806.128 kb on + strand, within HP15_2656 at 2806.208 kb on - strand, within HP15_2656
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 2,803,082 + HP15_2653 0.21 +0.7 2,803,090 - HP15_2653 0.22 -0.9 2,803,092 + HP15_2653 0.22 -0.8 2,803,107 + HP15_2653 0.24 -0.6 2,803,130 - HP15_2653 0.27 -1.6 2,803,160 - HP15_2653 0.30 +0.3 2,803,163 + HP15_2653 0.30 -0.5 2,803,171 - HP15_2653 0.31 -0.0 2,803,185 - HP15_2653 0.33 +0.4 2,803,294 + HP15_2653 0.45 -1.1 2,803,382 + HP15_2653 0.54 -0.6 2,803,382 + HP15_2653 0.54 -0.3 2,803,382 + HP15_2653 0.54 -0.2 2,803,390 - HP15_2653 0.55 -0.7 2,803,390 - HP15_2653 0.55 +1.2 2,803,392 + HP15_2653 0.55 -0.2 2,803,409 + HP15_2653 0.57 -1.0 2,803,415 + HP15_2653 0.58 -0.5 2,803,460 - HP15_2653 0.63 +0.2 2,803,462 + HP15_2653 0.63 -1.0 2,803,635 - HP15_2653 0.82 -1.0 2,803,788 - -1.0 2,804,236 - HP15_2655 0.17 +0.5 2,804,370 - HP15_2655 0.26 -0.5 2,804,495 + HP15_2655 0.34 -0.9 2,804,495 + HP15_2655 0.34 +0.9 2,804,508 - HP15_2655 0.35 -0.5 2,804,775 + HP15_2655 0.52 -1.1 2,804,911 - HP15_2655 0.61 -0.0 2,804,974 + HP15_2655 0.65 -0.4 2,804,993 + HP15_2655 0.67 +0.8 2,805,017 + HP15_2655 0.68 -1.5 2,805,017 + HP15_2655 0.68 -0.2 2,805,052 + HP15_2655 0.71 -0.8 2,805,160 + HP15_2655 0.78 +0.6 2,805,168 - HP15_2655 0.78 +0.1 2,805,168 - HP15_2655 0.78 -1.7 2,805,168 - HP15_2655 0.78 +0.8 2,805,168 - HP15_2655 0.78 +0.7 2,805,168 - HP15_2655 0.78 +0.1 2,805,299 - HP15_2655 0.87 -1.0 2,805,446 - +0.6 2,805,672 + -1.3 2,805,753 + HP15_2656 0.14 +0.2 2,805,847 + HP15_2656 0.19 -0.4 2,805,861 - HP15_2656 0.20 -0.8 2,805,985 - HP15_2656 0.28 -0.3 2,806,128 + HP15_2656 0.36 +2.5 2,806,208 - HP15_2656 0.41 -0.3
Or see this region's nucleotide sequence