Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2612 and HP15_2613 are separated by 78 nucleotides HP15_2613 and HP15_2614 are separated by 168 nucleotides HP15_2614 and HP15_2615 overlap by 4 nucleotides HP15_2615 and HP15_2616 are separated by 113 nucleotides
HP15_2612: HP15_2612 - lipoprotein, at 2,764,499 to 2,765,029
_2612
HP15_2613: HP15_2613 - protein belonging to uncharacterized protein family UPF0029, at 2,765,108 to 2,765,713
_2613
HP15_2614: HP15_2614 - integral membrane sensor signal transduction histidine kinase, at 2,765,882 to 2,767,204
_2614
HP15_2615: HP15_2615 - two component transcriptional regulator, winged helix family, at 2,767,201 to 2,767,887
_2615
HP15_2616: HP15_2616 - protein containing DUF482, at 2,768,001 to 2,769,227
_2616
Position (kb)
2765
2766
2767
2768 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2764.986 kb on + strand at 2764.994 kb on - strand at 2764.994 kb on - strand at 2765.067 kb on + strand at 2765.160 kb on + strand at 2765.232 kb on + strand, within HP15_2613 at 2765.345 kb on + strand, within HP15_2613 at 2765.347 kb on + strand, within HP15_2613 at 2765.374 kb on + strand, within HP15_2613 at 2765.382 kb on - strand, within HP15_2613 at 2765.478 kb on + strand, within HP15_2613 at 2765.546 kb on - strand, within HP15_2613 at 2765.571 kb on + strand, within HP15_2613 at 2765.598 kb on - strand, within HP15_2613 at 2765.598 kb on - strand, within HP15_2613 at 2765.598 kb on - strand, within HP15_2613 at 2765.677 kb on + strand at 2765.723 kb on + strand at 2765.731 kb on - strand at 2765.768 kb on - strand at 2766.150 kb on + strand, within HP15_2614 at 2766.238 kb on + strand, within HP15_2614 at 2766.238 kb on + strand, within HP15_2614 at 2766.246 kb on - strand, within HP15_2614 at 2766.567 kb on + strand, within HP15_2614 at 2766.575 kb on - strand, within HP15_2614 at 2767.094 kb on + strand at 2767.175 kb on + strand at 2767.227 kb on - strand at 2767.292 kb on - strand, within HP15_2615 at 2767.299 kb on + strand, within HP15_2615 at 2767.299 kb on + strand, within HP15_2615 at 2767.307 kb on - strand, within HP15_2615 at 2767.320 kb on - strand, within HP15_2615 at 2767.472 kb on + strand, within HP15_2615 at 2767.722 kb on + strand, within HP15_2615 at 2767.758 kb on - strand, within HP15_2615 at 2767.767 kb on + strand, within HP15_2615 at 2767.832 kb on - strand at 2767.832 kb on - strand at 2767.990 kb on - strand at 2767.990 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 2,764,986 + -0.9 2,764,994 - -0.4 2,764,994 - -0.7 2,765,067 + -0.4 2,765,160 + +0.2 2,765,232 + HP15_2613 0.20 -0.0 2,765,345 + HP15_2613 0.39 -0.9 2,765,347 + HP15_2613 0.39 -0.4 2,765,374 + HP15_2613 0.44 +0.0 2,765,382 - HP15_2613 0.45 -0.2 2,765,478 + HP15_2613 0.61 -0.7 2,765,546 - HP15_2613 0.72 -0.2 2,765,571 + HP15_2613 0.76 +1.5 2,765,598 - HP15_2613 0.81 +1.1 2,765,598 - HP15_2613 0.81 +1.7 2,765,598 - HP15_2613 0.81 -0.8 2,765,677 + -0.4 2,765,723 + +0.0 2,765,731 - -0.7 2,765,768 - -1.1 2,766,150 + HP15_2614 0.20 -3.1 2,766,238 + HP15_2614 0.27 +0.2 2,766,238 + HP15_2614 0.27 -1.4 2,766,246 - HP15_2614 0.28 +0.6 2,766,567 + HP15_2614 0.52 -0.9 2,766,575 - HP15_2614 0.52 -0.7 2,767,094 + -0.8 2,767,175 + -0.6 2,767,227 - -0.0 2,767,292 - HP15_2615 0.13 +1.6 2,767,299 + HP15_2615 0.14 +1.0 2,767,299 + HP15_2615 0.14 -1.4 2,767,307 - HP15_2615 0.15 +0.0 2,767,320 - HP15_2615 0.17 +1.3 2,767,472 + HP15_2615 0.39 -0.3 2,767,722 + HP15_2615 0.76 +0.1 2,767,758 - HP15_2615 0.81 +0.3 2,767,767 + HP15_2615 0.82 -0.7 2,767,832 - +3.0 2,767,832 - +1.4 2,767,990 - +0.1 2,767,990 - -0.2
Or see this region's nucleotide sequence