Strain Fitness in Marinobacter adhaerens HP15 around HP15_2614

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2612 and HP15_2613 are separated by 78 nucleotidesHP15_2613 and HP15_2614 are separated by 168 nucleotidesHP15_2614 and HP15_2615 overlap by 4 nucleotidesHP15_2615 and HP15_2616 are separated by 113 nucleotides HP15_2612: HP15_2612 - lipoprotein, at 2,764,499 to 2,765,029 _2612 HP15_2613: HP15_2613 - protein belonging to uncharacterized protein family UPF0029, at 2,765,108 to 2,765,713 _2613 HP15_2614: HP15_2614 - integral membrane sensor signal transduction histidine kinase, at 2,765,882 to 2,767,204 _2614 HP15_2615: HP15_2615 - two component transcriptional regulator, winged helix family, at 2,767,201 to 2,767,887 _2615 HP15_2616: HP15_2616 - protein containing DUF482, at 2,768,001 to 2,769,227 _2616 Position (kb) 2765 2766 2767 2768Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2764.986 kb on + strandat 2764.994 kb on - strandat 2764.994 kb on - strandat 2765.067 kb on + strandat 2765.160 kb on + strandat 2765.232 kb on + strand, within HP15_2613at 2765.345 kb on + strand, within HP15_2613at 2765.347 kb on + strand, within HP15_2613at 2765.374 kb on + strand, within HP15_2613at 2765.382 kb on - strand, within HP15_2613at 2765.478 kb on + strand, within HP15_2613at 2765.546 kb on - strand, within HP15_2613at 2765.571 kb on + strand, within HP15_2613at 2765.598 kb on - strand, within HP15_2613at 2765.598 kb on - strand, within HP15_2613at 2765.598 kb on - strand, within HP15_2613at 2765.677 kb on + strandat 2765.723 kb on + strandat 2765.731 kb on - strandat 2765.768 kb on - strandat 2766.150 kb on + strand, within HP15_2614at 2766.238 kb on + strand, within HP15_2614at 2766.238 kb on + strand, within HP15_2614at 2766.246 kb on - strand, within HP15_2614at 2766.567 kb on + strand, within HP15_2614at 2766.575 kb on - strand, within HP15_2614at 2767.094 kb on + strandat 2767.175 kb on + strandat 2767.227 kb on - strandat 2767.292 kb on - strand, within HP15_2615at 2767.299 kb on + strand, within HP15_2615at 2767.299 kb on + strand, within HP15_2615at 2767.307 kb on - strand, within HP15_2615at 2767.320 kb on - strand, within HP15_2615at 2767.472 kb on + strand, within HP15_2615at 2767.722 kb on + strand, within HP15_2615at 2767.758 kb on - strand, within HP15_2615at 2767.767 kb on + strand, within HP15_2615at 2767.832 kb on - strandat 2767.832 kb on - strandat 2767.990 kb on - strandat 2767.990 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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2,764,986 + -0.9
2,764,994 - -0.4
2,764,994 - -0.7
2,765,067 + -0.4
2,765,160 + +0.2
2,765,232 + HP15_2613 0.20 -0.0
2,765,345 + HP15_2613 0.39 -0.9
2,765,347 + HP15_2613 0.39 -0.4
2,765,374 + HP15_2613 0.44 +0.0
2,765,382 - HP15_2613 0.45 -0.2
2,765,478 + HP15_2613 0.61 -0.7
2,765,546 - HP15_2613 0.72 -0.2
2,765,571 + HP15_2613 0.76 +1.5
2,765,598 - HP15_2613 0.81 +1.1
2,765,598 - HP15_2613 0.81 +1.7
2,765,598 - HP15_2613 0.81 -0.8
2,765,677 + -0.4
2,765,723 + +0.0
2,765,731 - -0.7
2,765,768 - -1.1
2,766,150 + HP15_2614 0.20 -3.1
2,766,238 + HP15_2614 0.27 +0.2
2,766,238 + HP15_2614 0.27 -1.4
2,766,246 - HP15_2614 0.28 +0.6
2,766,567 + HP15_2614 0.52 -0.9
2,766,575 - HP15_2614 0.52 -0.7
2,767,094 + -0.8
2,767,175 + -0.6
2,767,227 - -0.0
2,767,292 - HP15_2615 0.13 +1.6
2,767,299 + HP15_2615 0.14 +1.0
2,767,299 + HP15_2615 0.14 -1.4
2,767,307 - HP15_2615 0.15 +0.0
2,767,320 - HP15_2615 0.17 +1.3
2,767,472 + HP15_2615 0.39 -0.3
2,767,722 + HP15_2615 0.76 +0.1
2,767,758 - HP15_2615 0.81 +0.3
2,767,767 + HP15_2615 0.82 -0.7
2,767,832 - +3.0
2,767,832 - +1.4
2,767,990 - +0.1
2,767,990 - -0.2

Or see this region's nucleotide sequence