Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2590 and HP15_2591 overlap by 4 nucleotides HP15_2591 and HP15_2592 are separated by 9 nucleotides HP15_2592 and HP15_2593 overlap by 8 nucleotides HP15_2593 and HP15_2594 are separated by 70 nucleotides
HP15_2590: HP15_2590 - monovalent cation/H+ antiporter subunit D, at 2,739,736 to 2,741,250
_2590
HP15_2591: HP15_2591 - monovalent cation/H+ antiporter subunit E, at 2,741,247 to 2,741,720
_2591
HP15_2592: HP15_2592 - multiple resistance and pH regulation protein F, at 2,741,730 to 2,742,002
_2592
HP15_2593: HP15_2593 - monovalent cation/proton antiporter, MnhG/PhaG subunit, at 2,741,995 to 2,742,402
_2593
HP15_2594: HP15_2594 - hypothetical protein, at 2,742,473 to 2,742,754
_2594
Position (kb)
2741
2742 Strain fitness (log2 ratio)
-1
0
1
2 at 2740.262 kb on + strand, within HP15_2590 at 2740.280 kb on - strand, within HP15_2590 at 2740.318 kb on + strand, within HP15_2590 at 2740.328 kb on + strand, within HP15_2590 at 2740.338 kb on - strand, within HP15_2590 at 2740.346 kb on - strand, within HP15_2590 at 2740.484 kb on + strand, within HP15_2590 at 2740.484 kb on + strand, within HP15_2590 at 2740.499 kb on - strand, within HP15_2590 at 2740.529 kb on - strand, within HP15_2590 at 2740.561 kb on - strand, within HP15_2590 at 2740.563 kb on - strand, within HP15_2590 at 2740.563 kb on - strand, within HP15_2590 at 2740.563 kb on - strand, within HP15_2590 at 2740.671 kb on + strand, within HP15_2590 at 2740.793 kb on + strand, within HP15_2590 at 2740.807 kb on + strand, within HP15_2590 at 2740.911 kb on + strand, within HP15_2590 at 2741.000 kb on - strand, within HP15_2590 at 2741.211 kb on + strand at 2741.258 kb on + strand at 2741.593 kb on + strand, within HP15_2591 at 2741.666 kb on + strand, within HP15_2591 at 2741.674 kb on - strand at 2741.696 kb on - strand at 2741.804 kb on - strand, within HP15_2592 at 2741.809 kb on + strand, within HP15_2592 at 2741.833 kb on - strand, within HP15_2592 at 2741.898 kb on + strand, within HP15_2592 at 2742.151 kb on + strand, within HP15_2593 at 2742.159 kb on - strand, within HP15_2593 at 2742.334 kb on - strand, within HP15_2593 at 2742.359 kb on - strand, within HP15_2593 at 2742.395 kb on - strand at 2742.460 kb on - strand at 2742.508 kb on - strand, within HP15_2594 at 2742.526 kb on + strand, within HP15_2594 at 2742.528 kb on + strand, within HP15_2594 at 2742.554 kb on - strand, within HP15_2594 at 2742.621 kb on + strand, within HP15_2594 at 2742.637 kb on - strand, within HP15_2594 at 2742.642 kb on + strand, within HP15_2594
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 2,740,262 + HP15_2590 0.35 +0.3 2,740,280 - HP15_2590 0.36 +0.0 2,740,318 + HP15_2590 0.38 +0.2 2,740,328 + HP15_2590 0.39 +1.1 2,740,338 - HP15_2590 0.40 -1.2 2,740,346 - HP15_2590 0.40 +0.7 2,740,484 + HP15_2590 0.49 -0.7 2,740,484 + HP15_2590 0.49 -0.4 2,740,499 - HP15_2590 0.50 +2.1 2,740,529 - HP15_2590 0.52 -0.0 2,740,561 - HP15_2590 0.54 -0.4 2,740,563 - HP15_2590 0.55 +0.2 2,740,563 - HP15_2590 0.55 +1.6 2,740,563 - HP15_2590 0.55 -0.2 2,740,671 + HP15_2590 0.62 +1.3 2,740,793 + HP15_2590 0.70 -0.6 2,740,807 + HP15_2590 0.71 -0.4 2,740,911 + HP15_2590 0.78 +0.2 2,741,000 - HP15_2590 0.83 -0.7 2,741,211 + -1.7 2,741,258 + -0.2 2,741,593 + HP15_2591 0.73 -0.7 2,741,666 + HP15_2591 0.88 -0.7 2,741,674 - +0.4 2,741,696 - -0.6 2,741,804 - HP15_2592 0.27 -0.1 2,741,809 + HP15_2592 0.29 +0.1 2,741,833 - HP15_2592 0.38 -1.1 2,741,898 + HP15_2592 0.62 -1.1 2,742,151 + HP15_2593 0.38 +0.4 2,742,159 - HP15_2593 0.40 -0.1 2,742,334 - HP15_2593 0.83 +1.5 2,742,359 - HP15_2593 0.89 +1.6 2,742,395 - -0.7 2,742,460 - -0.3 2,742,508 - HP15_2594 0.12 -0.2 2,742,526 + HP15_2594 0.19 +1.5 2,742,528 + HP15_2594 0.20 -0.7 2,742,554 - HP15_2594 0.29 +1.6 2,742,621 + HP15_2594 0.52 -0.4 2,742,637 - HP15_2594 0.58 -0.7 2,742,642 + HP15_2594 0.60 +0.9
Or see this region's nucleotide sequence