Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2382 and HP15_2383 are separated by 74 nucleotides HP15_2383 and HP15_2384 are separated by 208 nucleotides HP15_2384 and HP15_2385 are separated by 51 nucleotides
HP15_2382: HP15_2382 - UDP-N-acetylglucosamine 2-epimerase, at 2,511,217 to 2,512,350
_2382
HP15_2383: HP15_2383 - nucleotide sugar epimerase/dehydratase, at 2,512,425 to 2,514,233
_2383
HP15_2384: HP15_2384 - sugar transferase, at 2,514,442 to 2,514,999
_2384
HP15_2385: HP15_2385 - UDP-glucose 6-dehydrogenase, at 2,515,051 to 2,516,223
_2385
Position (kb)
2512
2513
2514
2515 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2511.568 kb on - strand, within HP15_2382 at 2511.583 kb on + strand, within HP15_2382 at 2511.626 kb on - strand, within HP15_2382 at 2511.626 kb on - strand, within HP15_2382 at 2511.629 kb on + strand, within HP15_2382 at 2511.848 kb on - strand, within HP15_2382 at 2512.147 kb on - strand, within HP15_2382 at 2512.151 kb on - strand, within HP15_2382 at 2512.198 kb on + strand, within HP15_2382 at 2512.210 kb on + strand, within HP15_2382 at 2512.218 kb on - strand, within HP15_2382 at 2512.259 kb on - strand at 2512.259 kb on - strand at 2512.305 kb on + strand at 2512.380 kb on - strand at 2512.469 kb on - strand at 2512.623 kb on + strand, within HP15_2383 at 2512.625 kb on + strand, within HP15_2383 at 2512.636 kb on + strand, within HP15_2383 at 2512.668 kb on + strand, within HP15_2383 at 2512.834 kb on + strand, within HP15_2383 at 2512.851 kb on + strand, within HP15_2383 at 2512.853 kb on + strand, within HP15_2383 at 2512.909 kb on - strand, within HP15_2383 at 2512.909 kb on - strand at 2512.909 kb on - strand, within HP15_2383 at 2512.909 kb on - strand, within HP15_2383 at 2512.976 kb on - strand, within HP15_2383 at 2512.999 kb on - strand, within HP15_2383 at 2513.054 kb on + strand, within HP15_2383 at 2513.081 kb on + strand, within HP15_2383 at 2513.112 kb on - strand, within HP15_2383 at 2513.128 kb on + strand, within HP15_2383 at 2513.279 kb on - strand, within HP15_2383 at 2513.327 kb on + strand, within HP15_2383 at 2513.335 kb on - strand, within HP15_2383 at 2513.343 kb on - strand, within HP15_2383 at 2513.368 kb on - strand, within HP15_2383 at 2513.375 kb on - strand, within HP15_2383 at 2513.377 kb on - strand, within HP15_2383 at 2513.488 kb on - strand, within HP15_2383 at 2513.514 kb on - strand, within HP15_2383 at 2513.514 kb on - strand, within HP15_2383 at 2513.524 kb on - strand, within HP15_2383 at 2513.524 kb on - strand, within HP15_2383 at 2513.542 kb on - strand, within HP15_2383 at 2513.547 kb on - strand, within HP15_2383 at 2513.554 kb on - strand, within HP15_2383 at 2513.689 kb on + strand, within HP15_2383 at 2513.689 kb on - strand, within HP15_2383 at 2513.695 kb on + strand, within HP15_2383 at 2513.733 kb on + strand, within HP15_2383 at 2513.739 kb on + strand, within HP15_2383 at 2513.777 kb on + strand, within HP15_2383 at 2513.798 kb on + strand, within HP15_2383 at 2513.806 kb on + strand, within HP15_2383 at 2513.808 kb on + strand, within HP15_2383 at 2513.857 kb on + strand, within HP15_2383 at 2513.876 kb on + strand, within HP15_2383 at 2513.876 kb on + strand, within HP15_2383 at 2513.975 kb on - strand, within HP15_2383 at 2514.000 kb on + strand, within HP15_2383 at 2514.000 kb on + strand, within HP15_2383 at 2514.001 kb on + strand, within HP15_2383 at 2514.006 kb on + strand, within HP15_2383 at 2514.008 kb on + strand, within HP15_2383 at 2514.014 kb on - strand, within HP15_2383 at 2514.058 kb on - strand at 2514.098 kb on + strand at 2514.108 kb on - strand at 2514.195 kb on + strand at 2514.217 kb on - strand at 2514.240 kb on + strand at 2514.240 kb on - strand at 2514.253 kb on - strand at 2514.355 kb on - strand at 2515.026 kb on - strand at 2515.036 kb on - strand at 2515.046 kb on - strand at 2515.084 kb on - strand at 2515.181 kb on + strand, within HP15_2385
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 2,511,568 - HP15_2382 0.31 -1.0 2,511,583 + HP15_2382 0.32 -0.5 2,511,626 - HP15_2382 0.36 +1.3 2,511,626 - HP15_2382 0.36 +1.4 2,511,629 + HP15_2382 0.36 +1.7 2,511,848 - HP15_2382 0.56 -1.3 2,512,147 - HP15_2382 0.82 -0.5 2,512,151 - HP15_2382 0.82 +1.5 2,512,198 + HP15_2382 0.87 -0.1 2,512,210 + HP15_2382 0.88 -0.7 2,512,218 - HP15_2382 0.88 +0.1 2,512,259 - +1.2 2,512,259 - -1.7 2,512,305 + +0.1 2,512,380 - +1.4 2,512,469 - -0.0 2,512,623 + HP15_2383 0.11 -1.5 2,512,625 + HP15_2383 0.11 -2.5 2,512,636 + HP15_2383 0.12 +0.1 2,512,668 + HP15_2383 0.13 -1.7 2,512,834 + HP15_2383 0.23 -0.4 2,512,851 + HP15_2383 0.24 -0.0 2,512,853 + HP15_2383 0.24 -1.9 2,512,909 - HP15_2383 0.27 +0.5 2,512,909 - +2.1 2,512,909 - HP15_2383 0.27 -2.0 2,512,909 - HP15_2383 0.27 -0.7 2,512,976 - HP15_2383 0.30 -1.7 2,512,999 - HP15_2383 0.32 -0.9 2,513,054 + HP15_2383 0.35 -0.9 2,513,081 + HP15_2383 0.36 -1.2 2,513,112 - HP15_2383 0.38 -0.5 2,513,128 + HP15_2383 0.39 -0.6 2,513,279 - HP15_2383 0.47 +1.2 2,513,327 + HP15_2383 0.50 -0.7 2,513,335 - HP15_2383 0.50 -0.6 2,513,343 - HP15_2383 0.51 -1.5 2,513,368 - HP15_2383 0.52 -0.4 2,513,375 - HP15_2383 0.53 -0.9 2,513,377 - HP15_2383 0.53 +0.8 2,513,488 - HP15_2383 0.59 -0.0 2,513,514 - HP15_2383 0.60 -2.1 2,513,514 - HP15_2383 0.60 -1.4 2,513,524 - HP15_2383 0.61 +0.1 2,513,524 - HP15_2383 0.61 -2.5 2,513,542 - HP15_2383 0.62 +0.2 2,513,547 - HP15_2383 0.62 -0.9 2,513,554 - HP15_2383 0.62 +0.0 2,513,689 + HP15_2383 0.70 +0.2 2,513,689 - HP15_2383 0.70 +0.0 2,513,695 + HP15_2383 0.70 -0.7 2,513,733 + HP15_2383 0.72 -0.5 2,513,739 + HP15_2383 0.73 +1.2 2,513,777 + HP15_2383 0.75 -0.1 2,513,798 + HP15_2383 0.76 +0.1 2,513,806 + HP15_2383 0.76 +1.0 2,513,808 + HP15_2383 0.76 -0.8 2,513,857 + HP15_2383 0.79 -0.6 2,513,876 + HP15_2383 0.80 -0.3 2,513,876 + HP15_2383 0.80 -0.9 2,513,975 - HP15_2383 0.86 +0.8 2,514,000 + HP15_2383 0.87 -2.4 2,514,000 + HP15_2383 0.87 -0.6 2,514,001 + HP15_2383 0.87 -0.6 2,514,006 + HP15_2383 0.87 -1.0 2,514,008 + HP15_2383 0.88 +1.6 2,514,014 - HP15_2383 0.88 -2.7 2,514,058 - -1.2 2,514,098 + -4.1 2,514,108 - -1.4 2,514,195 + -0.8 2,514,217 - -0.0 2,514,240 + -0.7 2,514,240 - -0.4 2,514,253 - -0.2 2,514,355 - -0.8 2,515,026 - +0.6 2,515,036 - -0.2 2,515,046 - -1.6 2,515,084 - -0.2 2,515,181 + HP15_2385 0.11 -0.7
Or see this region's nucleotide sequence