Strain Fitness in Marinobacter adhaerens HP15 around HP15_2369

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2367 and HP15_2368 are separated by 150 nucleotidesHP15_2368 and HP15_2369 are separated by 36 nucleotidesHP15_2369 and HP15_2370 are separated by 247 nucleotidesHP15_2370 and HP15_2371 are separated by 70 nucleotides HP15_2367: HP15_2367 - argininosuccinate synthase, at 2,492,385 to 2,493,611 _2367 HP15_2368: HP15_2368 - flagellar protein FliS, at 2,493,762 to 2,494,160 _2368 HP15_2369: HP15_2369 - flagellar hook-associated 2 domain protein, at 2,494,197 to 2,496,185 _2369 HP15_2370: HP15_2370 - flagellar protein FlaG protein, at 2,496,433 to 2,496,867 _2370 HP15_2371: HP15_2371 - flagellin FliC, at 2,496,938 to 2,498,782 _2371 Position (kb) 2494 2495 2496 2497Strain fitness (log2 ratio) -1 0 1 2at 2493.600 kb on - strandat 2493.693 kb on - strandat 2493.726 kb on + strandat 2493.726 kb on + strandat 2493.831 kb on - strand, within HP15_2368at 2493.835 kb on + strand, within HP15_2368at 2493.934 kb on + strand, within HP15_2368at 2494.029 kb on - strand, within HP15_2368at 2494.041 kb on - strand, within HP15_2368at 2494.069 kb on + strand, within HP15_2368at 2494.080 kb on - strand, within HP15_2368at 2494.146 kb on - strandat 2494.153 kb on - strandat 2494.212 kb on + strandat 2494.254 kb on - strandat 2494.259 kb on - strandat 2494.379 kb on + strandat 2494.615 kb on - strand, within HP15_2369at 2494.713 kb on - strand, within HP15_2369at 2494.806 kb on + strand, within HP15_2369at 2494.820 kb on - strand, within HP15_2369at 2494.831 kb on - strand, within HP15_2369at 2494.952 kb on + strand, within HP15_2369at 2494.955 kb on - strand, within HP15_2369at 2494.999 kb on - strand, within HP15_2369at 2495.017 kb on + strand, within HP15_2369at 2495.083 kb on + strand, within HP15_2369at 2495.083 kb on + strand, within HP15_2369at 2495.083 kb on + strand, within HP15_2369at 2495.091 kb on - strand, within HP15_2369at 2495.091 kb on - strand, within HP15_2369at 2495.091 kb on - strand, within HP15_2369at 2495.091 kb on - strand, within HP15_2369at 2495.096 kb on + strand, within HP15_2369at 2495.139 kb on - strand, within HP15_2369at 2495.174 kb on - strand, within HP15_2369at 2495.205 kb on + strand, within HP15_2369at 2495.221 kb on + strand, within HP15_2369at 2495.262 kb on - strand, within HP15_2369at 2495.357 kb on - strand, within HP15_2369at 2495.638 kb on + strand, within HP15_2369at 2495.733 kb on + strand, within HP15_2369at 2495.735 kb on + strand, within HP15_2369at 2495.741 kb on - strand, within HP15_2369at 2495.795 kb on + strand, within HP15_2369at 2495.795 kb on + strand, within HP15_2369at 2495.795 kb on + strand, within HP15_2369at 2495.800 kb on + strand, within HP15_2369at 2495.803 kb on - strand, within HP15_2369at 2495.803 kb on - strand, within HP15_2369at 2495.813 kb on - strand, within HP15_2369at 2495.824 kb on - strand, within HP15_2369at 2495.888 kb on - strand, within HP15_2369at 2495.968 kb on + strand, within HP15_2369at 2495.976 kb on - strand, within HP15_2369at 2495.994 kb on - strandat 2496.028 kb on + strandat 2496.036 kb on - strandat 2496.076 kb on - strandat 2496.141 kb on + strandat 2496.190 kb on - strandat 2496.190 kb on - strandat 2496.429 kb on - strandat 2496.431 kb on + strandat 2496.439 kb on - strandat 2496.689 kb on + strand, within HP15_2370at 2496.697 kb on - strand, within HP15_2370at 2496.697 kb on - strand, within HP15_2370at 2496.699 kb on + strand, within HP15_2370at 2496.707 kb on - strand, within HP15_2370at 2496.767 kb on + strand, within HP15_2370at 2496.837 kb on + strandat 2496.845 kb on - strandat 2496.847 kb on + strandat 2496.852 kb on + strandat 2496.852 kb on + strandat 2496.883 kb on + strandat 2496.891 kb on - strandat 2496.915 kb on + strandat 2496.921 kb on - strandat 2496.941 kb on + strandat 2496.949 kb on - strandat 2497.020 kb on + strandat 2497.093 kb on + strandat 2497.096 kb on - strandat 2497.106 kb on - strandat 2497.133 kb on + strand, within HP15_2371at 2497.141 kb on - strand, within HP15_2371at 2497.141 kb on - strand, within HP15_2371at 2497.178 kb on - strand, within HP15_2371

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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2,493,600 - -1.0
2,493,693 - +2.2
2,493,726 + -0.2
2,493,726 + +1.7
2,493,831 - HP15_2368 0.17 +1.0
2,493,835 + HP15_2368 0.18 +2.0
2,493,934 + HP15_2368 0.43 +1.3
2,494,029 - HP15_2368 0.67 +1.6
2,494,041 - HP15_2368 0.70 +1.3
2,494,069 + HP15_2368 0.77 +0.9
2,494,080 - HP15_2368 0.80 +1.7
2,494,146 - +1.1
2,494,153 - +1.6
2,494,212 + +1.4
2,494,254 - +0.5
2,494,259 - +1.2
2,494,379 + +1.6
2,494,615 - HP15_2369 0.21 +1.6
2,494,713 - HP15_2369 0.26 +1.9
2,494,806 + HP15_2369 0.31 +1.7
2,494,820 - HP15_2369 0.31 +1.5
2,494,831 - HP15_2369 0.32 +1.7
2,494,952 + HP15_2369 0.38 +2.0
2,494,955 - HP15_2369 0.38 +1.8
2,494,999 - HP15_2369 0.40 +1.7
2,495,017 + HP15_2369 0.41 +1.3
2,495,083 + HP15_2369 0.45 +2.0
2,495,083 + HP15_2369 0.45 +1.3
2,495,083 + HP15_2369 0.45 +0.4
2,495,091 - HP15_2369 0.45 +0.6
2,495,091 - HP15_2369 0.45 +1.3
2,495,091 - HP15_2369 0.45 +1.4
2,495,091 - HP15_2369 0.45 +1.3
2,495,096 + HP15_2369 0.45 +0.8
2,495,139 - HP15_2369 0.47 +1.5
2,495,174 - HP15_2369 0.49 +0.5
2,495,205 + HP15_2369 0.51 +1.3
2,495,221 + HP15_2369 0.51 +0.9
2,495,262 - HP15_2369 0.54 +1.5
2,495,357 - HP15_2369 0.58 +0.8
2,495,638 + HP15_2369 0.72 +1.5
2,495,733 + HP15_2369 0.77 +1.8
2,495,735 + HP15_2369 0.77 +1.5
2,495,741 - HP15_2369 0.78 +1.7
2,495,795 + HP15_2369 0.80 +1.7
2,495,795 + HP15_2369 0.80 +0.8
2,495,795 + HP15_2369 0.80 +1.9
2,495,800 + HP15_2369 0.81 +2.2
2,495,803 - HP15_2369 0.81 +1.5
2,495,803 - HP15_2369 0.81 +1.7
2,495,813 - HP15_2369 0.81 +1.3
2,495,824 - HP15_2369 0.82 +1.4
2,495,888 - HP15_2369 0.85 +1.4
2,495,968 + HP15_2369 0.89 +1.3
2,495,976 - HP15_2369 0.89 +1.5
2,495,994 - +0.2
2,496,028 + +1.6
2,496,036 - +0.7
2,496,076 - +1.3
2,496,141 + +1.4
2,496,190 - +0.2
2,496,190 - +1.1
2,496,429 - -0.3
2,496,431 + +2.2
2,496,439 - +1.5
2,496,689 + HP15_2370 0.59 +1.4
2,496,697 - HP15_2370 0.61 +0.5
2,496,697 - HP15_2370 0.61 +0.2
2,496,699 + HP15_2370 0.61 +0.7
2,496,707 - HP15_2370 0.63 -0.6
2,496,767 + HP15_2370 0.77 +1.6
2,496,837 + +0.5
2,496,845 - +1.4
2,496,847 + +1.7
2,496,852 + +0.3
2,496,852 + +1.2
2,496,883 + +1.2
2,496,891 - +0.1
2,496,915 + -0.6
2,496,921 - -0.1
2,496,941 + +1.6
2,496,949 - +1.3
2,497,020 + +2.7
2,497,093 + +1.0
2,497,096 - +0.7
2,497,106 - +1.5
2,497,133 + HP15_2371 0.11 +1.1
2,497,141 - HP15_2371 0.11 +1.3
2,497,141 - HP15_2371 0.11 +1.0
2,497,178 - HP15_2371 0.13 +1.4

Or see this region's nucleotide sequence