Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2367 and HP15_2368 are separated by 150 nucleotides HP15_2368 and HP15_2369 are separated by 36 nucleotides HP15_2369 and HP15_2370 are separated by 247 nucleotides HP15_2370 and HP15_2371 are separated by 70 nucleotides
HP15_2367: HP15_2367 - argininosuccinate synthase, at 2,492,385 to 2,493,611
_2367
HP15_2368: HP15_2368 - flagellar protein FliS, at 2,493,762 to 2,494,160
_2368
HP15_2369: HP15_2369 - flagellar hook-associated 2 domain protein, at 2,494,197 to 2,496,185
_2369
HP15_2370: HP15_2370 - flagellar protein FlaG protein, at 2,496,433 to 2,496,867
_2370
HP15_2371: HP15_2371 - flagellin FliC, at 2,496,938 to 2,498,782
_2371
Position (kb)
2494
2495
2496
2497 Strain fitness (log2 ratio)
-1
0
1
2 at 2493.600 kb on - strand at 2493.693 kb on - strand at 2493.726 kb on + strand at 2493.726 kb on + strand at 2493.831 kb on - strand, within HP15_2368 at 2493.835 kb on + strand, within HP15_2368 at 2493.934 kb on + strand, within HP15_2368 at 2494.029 kb on - strand, within HP15_2368 at 2494.041 kb on - strand, within HP15_2368 at 2494.069 kb on + strand, within HP15_2368 at 2494.080 kb on - strand, within HP15_2368 at 2494.146 kb on - strand at 2494.153 kb on - strand at 2494.212 kb on + strand at 2494.254 kb on - strand at 2494.259 kb on - strand at 2494.379 kb on + strand at 2494.615 kb on - strand, within HP15_2369 at 2494.713 kb on - strand, within HP15_2369 at 2494.806 kb on + strand, within HP15_2369 at 2494.820 kb on - strand, within HP15_2369 at 2494.831 kb on - strand, within HP15_2369 at 2494.952 kb on + strand, within HP15_2369 at 2494.955 kb on - strand, within HP15_2369 at 2494.999 kb on - strand, within HP15_2369 at 2495.017 kb on + strand, within HP15_2369 at 2495.083 kb on + strand, within HP15_2369 at 2495.083 kb on + strand, within HP15_2369 at 2495.083 kb on + strand, within HP15_2369 at 2495.091 kb on - strand, within HP15_2369 at 2495.091 kb on - strand, within HP15_2369 at 2495.091 kb on - strand, within HP15_2369 at 2495.091 kb on - strand, within HP15_2369 at 2495.096 kb on + strand, within HP15_2369 at 2495.139 kb on - strand, within HP15_2369 at 2495.174 kb on - strand, within HP15_2369 at 2495.205 kb on + strand, within HP15_2369 at 2495.221 kb on + strand, within HP15_2369 at 2495.262 kb on - strand, within HP15_2369 at 2495.357 kb on - strand, within HP15_2369 at 2495.638 kb on + strand, within HP15_2369 at 2495.733 kb on + strand, within HP15_2369 at 2495.735 kb on + strand, within HP15_2369 at 2495.741 kb on - strand, within HP15_2369 at 2495.795 kb on + strand, within HP15_2369 at 2495.795 kb on + strand, within HP15_2369 at 2495.795 kb on + strand, within HP15_2369 at 2495.800 kb on + strand, within HP15_2369 at 2495.803 kb on - strand, within HP15_2369 at 2495.803 kb on - strand, within HP15_2369 at 2495.813 kb on - strand, within HP15_2369 at 2495.824 kb on - strand, within HP15_2369 at 2495.888 kb on - strand, within HP15_2369 at 2495.968 kb on + strand, within HP15_2369 at 2495.976 kb on - strand, within HP15_2369 at 2495.994 kb on - strand at 2496.028 kb on + strand at 2496.036 kb on - strand at 2496.076 kb on - strand at 2496.141 kb on + strand at 2496.190 kb on - strand at 2496.190 kb on - strand at 2496.429 kb on - strand at 2496.431 kb on + strand at 2496.439 kb on - strand at 2496.689 kb on + strand, within HP15_2370 at 2496.697 kb on - strand, within HP15_2370 at 2496.697 kb on - strand, within HP15_2370 at 2496.699 kb on + strand, within HP15_2370 at 2496.707 kb on - strand, within HP15_2370 at 2496.767 kb on + strand, within HP15_2370 at 2496.837 kb on + strand at 2496.845 kb on - strand at 2496.847 kb on + strand at 2496.852 kb on + strand at 2496.852 kb on + strand at 2496.883 kb on + strand at 2496.891 kb on - strand at 2496.915 kb on + strand at 2496.921 kb on - strand at 2496.941 kb on + strand at 2496.949 kb on - strand at 2497.020 kb on + strand at 2497.093 kb on + strand at 2497.096 kb on - strand at 2497.106 kb on - strand at 2497.133 kb on + strand, within HP15_2371 at 2497.141 kb on - strand, within HP15_2371 at 2497.141 kb on - strand, within HP15_2371 at 2497.178 kb on - strand, within HP15_2371
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 2,493,600 - -1.0 2,493,693 - +2.2 2,493,726 + -0.2 2,493,726 + +1.7 2,493,831 - HP15_2368 0.17 +1.0 2,493,835 + HP15_2368 0.18 +2.0 2,493,934 + HP15_2368 0.43 +1.3 2,494,029 - HP15_2368 0.67 +1.6 2,494,041 - HP15_2368 0.70 +1.3 2,494,069 + HP15_2368 0.77 +0.9 2,494,080 - HP15_2368 0.80 +1.7 2,494,146 - +1.1 2,494,153 - +1.6 2,494,212 + +1.4 2,494,254 - +0.5 2,494,259 - +1.2 2,494,379 + +1.6 2,494,615 - HP15_2369 0.21 +1.6 2,494,713 - HP15_2369 0.26 +1.9 2,494,806 + HP15_2369 0.31 +1.7 2,494,820 - HP15_2369 0.31 +1.5 2,494,831 - HP15_2369 0.32 +1.7 2,494,952 + HP15_2369 0.38 +2.0 2,494,955 - HP15_2369 0.38 +1.8 2,494,999 - HP15_2369 0.40 +1.7 2,495,017 + HP15_2369 0.41 +1.3 2,495,083 + HP15_2369 0.45 +2.0 2,495,083 + HP15_2369 0.45 +1.3 2,495,083 + HP15_2369 0.45 +0.4 2,495,091 - HP15_2369 0.45 +0.6 2,495,091 - HP15_2369 0.45 +1.3 2,495,091 - HP15_2369 0.45 +1.4 2,495,091 - HP15_2369 0.45 +1.3 2,495,096 + HP15_2369 0.45 +0.8 2,495,139 - HP15_2369 0.47 +1.5 2,495,174 - HP15_2369 0.49 +0.5 2,495,205 + HP15_2369 0.51 +1.3 2,495,221 + HP15_2369 0.51 +0.9 2,495,262 - HP15_2369 0.54 +1.5 2,495,357 - HP15_2369 0.58 +0.8 2,495,638 + HP15_2369 0.72 +1.5 2,495,733 + HP15_2369 0.77 +1.8 2,495,735 + HP15_2369 0.77 +1.5 2,495,741 - HP15_2369 0.78 +1.7 2,495,795 + HP15_2369 0.80 +1.7 2,495,795 + HP15_2369 0.80 +0.8 2,495,795 + HP15_2369 0.80 +1.9 2,495,800 + HP15_2369 0.81 +2.2 2,495,803 - HP15_2369 0.81 +1.5 2,495,803 - HP15_2369 0.81 +1.7 2,495,813 - HP15_2369 0.81 +1.3 2,495,824 - HP15_2369 0.82 +1.4 2,495,888 - HP15_2369 0.85 +1.4 2,495,968 + HP15_2369 0.89 +1.3 2,495,976 - HP15_2369 0.89 +1.5 2,495,994 - +0.2 2,496,028 + +1.6 2,496,036 - +0.7 2,496,076 - +1.3 2,496,141 + +1.4 2,496,190 - +0.2 2,496,190 - +1.1 2,496,429 - -0.3 2,496,431 + +2.2 2,496,439 - +1.5 2,496,689 + HP15_2370 0.59 +1.4 2,496,697 - HP15_2370 0.61 +0.5 2,496,697 - HP15_2370 0.61 +0.2 2,496,699 + HP15_2370 0.61 +0.7 2,496,707 - HP15_2370 0.63 -0.6 2,496,767 + HP15_2370 0.77 +1.6 2,496,837 + +0.5 2,496,845 - +1.4 2,496,847 + +1.7 2,496,852 + +0.3 2,496,852 + +1.2 2,496,883 + +1.2 2,496,891 - +0.1 2,496,915 + -0.6 2,496,921 - -0.1 2,496,941 + +1.6 2,496,949 - +1.3 2,497,020 + +2.7 2,497,093 + +1.0 2,497,096 - +0.7 2,497,106 - +1.5 2,497,133 + HP15_2371 0.11 +1.1 2,497,141 - HP15_2371 0.11 +1.3 2,497,141 - HP15_2371 0.11 +1.0 2,497,178 - HP15_2371 0.13 +1.4
Or see this region's nucleotide sequence