Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2350 and HP15_2351 are separated by 71 nucleotides HP15_2351 and HP15_2352 are separated by 284 nucleotides HP15_2352 and HP15_2353 are separated by 22 nucleotides HP15_2353 and HP15_2354 are separated by 11 nucleotides
HP15_2350: HP15_2350 - phosphoribosylaminoimidazole carboxylase ATPase subunit, at 2,473,434 to 2,474,552
_2350
HP15_2351: HP15_2351 - superoxide dismutase, Fe, at 2,474,624 to 2,475,202
_2351
HP15_2352: HP15_2352 - sensory box sensor/GGDEF/EAL domain protein, at 2,475,487 to 2,477,547
_2352
HP15_2353: HP15_2353 - LemA family protein, at 2,477,570 to 2,478,157
_2353
HP15_2354: HP15_2354 - peptidase M48, Ste24p, at 2,478,169 to 2,480,166
_2354
Position (kb)
2475
2476
2477
2478 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2474.546 kb on + strand at 2474.554 kb on - strand at 2475.244 kb on - strand at 2475.361 kb on + strand at 2475.427 kb on + strand at 2475.440 kb on - strand at 2475.578 kb on + strand at 2475.602 kb on + strand at 2475.610 kb on - strand at 2475.619 kb on + strand at 2475.665 kb on + strand at 2475.681 kb on + strand at 2475.687 kb on - strand at 2475.921 kb on + strand, within HP15_2352 at 2475.927 kb on - strand, within HP15_2352 at 2475.948 kb on - strand, within HP15_2352 at 2475.949 kb on + strand, within HP15_2352 at 2475.994 kb on + strand, within HP15_2352 at 2475.995 kb on - strand, within HP15_2352 at 2476.012 kb on + strand, within HP15_2352 at 2476.020 kb on - strand, within HP15_2352 at 2476.142 kb on + strand, within HP15_2352 at 2476.150 kb on - strand, within HP15_2352 at 2476.251 kb on - strand, within HP15_2352 at 2476.262 kb on - strand, within HP15_2352 at 2476.262 kb on - strand, within HP15_2352 at 2476.274 kb on - strand, within HP15_2352 at 2476.469 kb on - strand, within HP15_2352 at 2476.474 kb on + strand, within HP15_2352 at 2476.474 kb on - strand, within HP15_2352 at 2476.484 kb on - strand, within HP15_2352 at 2476.524 kb on + strand, within HP15_2352 at 2476.532 kb on - strand, within HP15_2352 at 2476.544 kb on - strand, within HP15_2352 at 2476.588 kb on + strand, within HP15_2352 at 2476.612 kb on + strand, within HP15_2352 at 2476.615 kb on - strand, within HP15_2352 at 2476.615 kb on - strand, within HP15_2352 at 2476.644 kb on + strand, within HP15_2352 at 2476.670 kb on - strand, within HP15_2352 at 2476.688 kb on - strand, within HP15_2352 at 2476.859 kb on + strand, within HP15_2352 at 2476.859 kb on + strand, within HP15_2352 at 2476.969 kb on + strand, within HP15_2352 at 2476.977 kb on - strand, within HP15_2352 at 2477.048 kb on + strand, within HP15_2352 at 2477.048 kb on - strand, within HP15_2352 at 2477.117 kb on - strand, within HP15_2352 at 2477.136 kb on - strand, within HP15_2352 at 2477.151 kb on - strand, within HP15_2352 at 2477.248 kb on + strand, within HP15_2352 at 2477.371 kb on + strand at 2477.380 kb on - strand at 2477.380 kb on - strand at 2477.564 kb on - strand at 2477.564 kb on - strand at 2477.564 kb on - strand at 2477.638 kb on - strand, within HP15_2353 at 2477.769 kb on + strand, within HP15_2353 at 2477.866 kb on - strand, within HP15_2353 at 2477.962 kb on + strand, within HP15_2353 at 2478.010 kb on + strand, within HP15_2353 at 2478.033 kb on + strand, within HP15_2353 at 2478.207 kb on - strand at 2478.210 kb on + strand at 2478.215 kb on + strand at 2478.322 kb on - strand at 2478.415 kb on - strand, within HP15_2354
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 2,474,546 + +0.9 2,474,554 - -1.5 2,475,244 - +0.3 2,475,361 + -0.6 2,475,427 + +1.7 2,475,440 - +1.6 2,475,578 + -0.5 2,475,602 + -0.3 2,475,610 - -1.0 2,475,619 + -0.2 2,475,665 + +0.0 2,475,681 + -0.3 2,475,687 - -0.4 2,475,921 + HP15_2352 0.21 -0.5 2,475,927 - HP15_2352 0.21 +1.4 2,475,948 - HP15_2352 0.22 -2.5 2,475,949 + HP15_2352 0.22 -0.7 2,475,994 + HP15_2352 0.25 -0.0 2,475,995 - HP15_2352 0.25 +0.2 2,476,012 + HP15_2352 0.25 -1.1 2,476,020 - HP15_2352 0.26 +0.8 2,476,142 + HP15_2352 0.32 -1.0 2,476,150 - HP15_2352 0.32 -0.3 2,476,251 - HP15_2352 0.37 -0.1 2,476,262 - HP15_2352 0.38 -0.5 2,476,262 - HP15_2352 0.38 +1.5 2,476,274 - HP15_2352 0.38 -0.3 2,476,469 - HP15_2352 0.48 -1.2 2,476,474 + HP15_2352 0.48 -0.2 2,476,474 - HP15_2352 0.48 -0.2 2,476,484 - HP15_2352 0.48 +1.9 2,476,524 + HP15_2352 0.50 -0.5 2,476,532 - HP15_2352 0.51 +0.0 2,476,544 - HP15_2352 0.51 -0.2 2,476,588 + HP15_2352 0.53 -0.6 2,476,612 + HP15_2352 0.55 -1.2 2,476,615 - HP15_2352 0.55 -0.9 2,476,615 - HP15_2352 0.55 -2.8 2,476,644 + HP15_2352 0.56 -0.6 2,476,670 - HP15_2352 0.57 -1.2 2,476,688 - HP15_2352 0.58 +0.4 2,476,859 + HP15_2352 0.67 +0.1 2,476,859 + HP15_2352 0.67 -0.6 2,476,969 + HP15_2352 0.72 +1.4 2,476,977 - HP15_2352 0.72 -0.5 2,477,048 + HP15_2352 0.76 +1.3 2,477,048 - HP15_2352 0.76 -0.8 2,477,117 - HP15_2352 0.79 +2.0 2,477,136 - HP15_2352 0.80 +0.0 2,477,151 - HP15_2352 0.81 -1.1 2,477,248 + HP15_2352 0.85 -1.0 2,477,371 + -0.5 2,477,380 - -0.8 2,477,380 - -0.4 2,477,564 - -0.1 2,477,564 - -1.2 2,477,564 - +1.5 2,477,638 - HP15_2353 0.12 -0.3 2,477,769 + HP15_2353 0.34 +1.4 2,477,866 - HP15_2353 0.50 -0.3 2,477,962 + HP15_2353 0.67 +1.4 2,478,010 + HP15_2353 0.75 +1.7 2,478,033 + HP15_2353 0.79 +1.6 2,478,207 - -1.5 2,478,210 + +1.9 2,478,215 + +1.5 2,478,322 - +1.3 2,478,415 - HP15_2354 0.12 -0.0
Or see this region's nucleotide sequence