Strain Fitness in Marinobacter adhaerens HP15 around HP15_2351

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2350 and HP15_2351 are separated by 71 nucleotidesHP15_2351 and HP15_2352 are separated by 284 nucleotides HP15_2350: HP15_2350 - phosphoribosylaminoimidazole carboxylase ATPase subunit, at 2,473,434 to 2,474,552 _2350 HP15_2351: HP15_2351 - superoxide dismutase, Fe, at 2,474,624 to 2,475,202 _2351 HP15_2352: HP15_2352 - sensory box sensor/GGDEF/EAL domain protein, at 2,475,487 to 2,477,547 _2352 Position (kb) 2474 2475 2476Strain fitness (log2 ratio) -2 -1 0 1at 2474.546 kb on + strandat 2474.554 kb on - strandat 2475.244 kb on - strandat 2475.361 kb on + strandat 2475.427 kb on + strandat 2475.440 kb on - strandat 2475.578 kb on + strandat 2475.602 kb on + strandat 2475.610 kb on - strandat 2475.619 kb on + strandat 2475.665 kb on + strandat 2475.681 kb on + strandat 2475.687 kb on - strandat 2475.921 kb on + strand, within HP15_2352at 2475.927 kb on - strand, within HP15_2352at 2475.948 kb on - strand, within HP15_2352at 2475.949 kb on + strand, within HP15_2352at 2475.994 kb on + strand, within HP15_2352at 2475.995 kb on - strand, within HP15_2352at 2476.012 kb on + strand, within HP15_2352at 2476.020 kb on - strand, within HP15_2352at 2476.142 kb on + strand, within HP15_2352at 2476.150 kb on - strand, within HP15_2352

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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2,474,546 + +0.9
2,474,554 - -1.5
2,475,244 - +0.3
2,475,361 + -0.6
2,475,427 + +1.7
2,475,440 - +1.6
2,475,578 + -0.5
2,475,602 + -0.3
2,475,610 - -1.0
2,475,619 + -0.2
2,475,665 + +0.0
2,475,681 + -0.3
2,475,687 - -0.4
2,475,921 + HP15_2352 0.21 -0.5
2,475,927 - HP15_2352 0.21 +1.4
2,475,948 - HP15_2352 0.22 -2.5
2,475,949 + HP15_2352 0.22 -0.7
2,475,994 + HP15_2352 0.25 -0.0
2,475,995 - HP15_2352 0.25 +0.2
2,476,012 + HP15_2352 0.25 -1.1
2,476,020 - HP15_2352 0.26 +0.8
2,476,142 + HP15_2352 0.32 -1.0
2,476,150 - HP15_2352 0.32 -0.3

Or see this region's nucleotide sequence