Strain Fitness in Marinobacter adhaerens HP15 around HP15_2167

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2166 and HP15_2167 are separated by 204 nucleotidesHP15_2167 and HP15_2168 are separated by 185 nucleotides HP15_2166: HP15_2166 - glycerol kinase, at 2,273,876 to 2,275,348 _2166 HP15_2167: HP15_2167 - transcriptional repressor for the dissimilation of sn-glycerol 3-phosphate, DeoR family protein, at 2,275,553 to 2,276,309 _2167 HP15_2168: HP15_2168 - FAD dependent oxidoreductase, at 2,276,495 to 2,278,018 _2168 Position (kb) 2275 2276 2277Strain fitness (log2 ratio) -3 -2 -1 0 1at 2274.583 kb on + strand, within HP15_2166at 2274.632 kb on + strand, within HP15_2166at 2274.728 kb on + strand, within HP15_2166at 2274.784 kb on + strand, within HP15_2166at 2274.810 kb on + strand, within HP15_2166at 2274.851 kb on + strand, within HP15_2166at 2274.990 kb on - strand, within HP15_2166at 2274.996 kb on - strand, within HP15_2166at 2274.996 kb on - strand, within HP15_2166at 2275.027 kb on - strand, within HP15_2166at 2275.116 kb on - strand, within HP15_2166at 2275.127 kb on + strand, within HP15_2166at 2275.300 kb on - strandat 2275.300 kb on - strandat 2275.324 kb on - strandat 2275.614 kb on + strandat 2275.643 kb on - strand, within HP15_2167at 2275.649 kb on + strand, within HP15_2167at 2275.649 kb on + strand, within HP15_2167at 2275.708 kb on + strand, within HP15_2167at 2275.828 kb on - strand, within HP15_2167at 2276.029 kb on - strand, within HP15_2167at 2276.188 kb on - strand, within HP15_2167at 2276.295 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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2,274,583 + HP15_2166 0.48 -0.7
2,274,632 + HP15_2166 0.51 +1.7
2,274,728 + HP15_2166 0.58 +0.2
2,274,784 + HP15_2166 0.62 -0.3
2,274,810 + HP15_2166 0.63 -2.1
2,274,851 + HP15_2166 0.66 -0.8
2,274,990 - HP15_2166 0.76 -0.2
2,274,996 - HP15_2166 0.76 -0.5
2,274,996 - HP15_2166 0.76 -0.4
2,275,027 - HP15_2166 0.78 +1.3
2,275,116 - HP15_2166 0.84 -0.4
2,275,127 + HP15_2166 0.85 -0.5
2,275,300 - +0.4
2,275,300 - -0.6
2,275,324 - +0.4
2,275,614 + -3.6
2,275,643 - HP15_2167 0.12 -2.7
2,275,649 + HP15_2167 0.13 -1.9
2,275,649 + HP15_2167 0.13 -1.4
2,275,708 + HP15_2167 0.20 -0.5
2,275,828 - HP15_2167 0.36 -2.1
2,276,029 - HP15_2167 0.63 +0.1
2,276,188 - HP15_2167 0.84 -0.5
2,276,295 - -1.5

Or see this region's nucleotide sequence