Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_189 and HP15_190 are separated by 240 nucleotides HP15_190 and HP15_191 are separated by 290 nucleotides HP15_191 and HP15_192 are separated by 445 nucleotides HP15_192 and HP15_193 overlap by 4 nucleotides
HP15_189: HP15_189 - plasmidpTOM9-like protein, at 178,941 to 179,636
_189
HP15_190: HP15_190 - protein containing methyltransferase type 12 domain, at 179,877 to 180,323
_190
HP15_191: HP15_191 - Hg(II)--responsive transcriptional regulator, at 180,614 to 181,048
_191
HP15_192: HP15_192 - Hg(II)-transport protein perimplasmic component, at 181,494 to 181,796
_192
HP15_193: HP15_193 - conserved hypothetical protein, membrane, at 181,793 to 182,053
_193
HP15_194: HP15_194 - mercuric ion reductase, at 182,043 to 183,449
_194
Position (kb) 180
181
182 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 179.648 kb on - strand at 179.700 kb on - strand at 179.769 kb on + strand at 179.787 kb on - strand at 179.834 kb on - strand at 179.901 kb on + strand at 179.953 kb on + strand, within HP15_190 at 179.954 kb on - strand, within HP15_190 at 180.046 kb on - strand, within HP15_190 at 180.208 kb on - strand, within HP15_190 at 180.215 kb on + strand, within HP15_190 at 180.222 kb on - strand, within HP15_190 at 180.237 kb on + strand, within HP15_190 at 180.296 kb on + strand at 180.296 kb on + strand at 180.316 kb on - strand at 180.322 kb on + strand at 180.504 kb on - strand at 180.594 kb on - strand at 180.605 kb on + strand at 180.653 kb on + strand at 180.686 kb on - strand, within HP15_191 at 180.716 kb on + strand, within HP15_191 at 180.729 kb on - strand, within HP15_191 at 180.892 kb on - strand, within HP15_191 at 180.916 kb on + strand, within HP15_191 at 181.098 kb on - strand at 181.110 kb on + strand at 181.152 kb on + strand at 181.164 kb on + strand at 181.344 kb on + strand at 181.362 kb on + strand at 181.433 kb on - strand at 181.459 kb on - strand at 181.520 kb on + strand at 181.522 kb on + strand at 181.544 kb on + strand, within HP15_192 at 181.572 kb on + strand, within HP15_192 at 181.584 kb on + strand, within HP15_192 at 181.592 kb on - strand, within HP15_192 at 181.602 kb on + strand, within HP15_192 at 181.634 kb on + strand, within HP15_192 at 181.661 kb on + strand, within HP15_192 at 181.669 kb on - strand, within HP15_192 at 181.669 kb on - strand, within HP15_192 at 181.698 kb on - strand, within HP15_192 at 181.716 kb on - strand, within HP15_192 at 181.716 kb on - strand, within HP15_192 at 181.732 kb on - strand, within HP15_192 at 181.751 kb on + strand, within HP15_192 at 181.790 kb on + strand at 181.826 kb on - strand, within HP15_193 at 181.838 kb on + strand, within HP15_193 at 181.857 kb on + strand, within HP15_193 at 181.857 kb on + strand, within HP15_193 at 181.890 kb on + strand, within HP15_193 at 181.957 kb on - strand, within HP15_193 at 181.959 kb on + strand, within HP15_193 at 181.959 kb on + strand, within HP15_193 at 181.967 kb on - strand, within HP15_193 at 181.975 kb on - strand, within HP15_193
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 179,648 - +1.7 179,700 - +0.1 179,769 + +1.8 179,787 - -1.8 179,834 - +2.9 179,901 + +0.1 179,953 + HP15_190 0.17 -0.5 179,954 - HP15_190 0.17 +2.2 180,046 - HP15_190 0.38 -0.6 180,208 - HP15_190 0.74 -0.0 180,215 + HP15_190 0.76 +0.2 180,222 - HP15_190 0.77 +0.6 180,237 + HP15_190 0.81 -0.2 180,296 + -0.2 180,296 + -0.2 180,316 - +1.2 180,322 + -1.1 180,504 - -0.4 180,594 - +0.8 180,605 + -0.8 180,653 + +0.0 180,686 - HP15_191 0.17 -0.2 180,716 + HP15_191 0.23 -0.8 180,729 - HP15_191 0.26 +1.6 180,892 - HP15_191 0.64 +0.8 180,916 + HP15_191 0.69 +1.9 181,098 - +1.7 181,110 + +0.3 181,152 + +1.4 181,164 + +0.1 181,344 + +2.2 181,362 + -0.5 181,433 - +1.8 181,459 - -0.8 181,520 + +0.6 181,522 + -0.5 181,544 + HP15_192 0.17 +0.3 181,572 + HP15_192 0.26 -1.6 181,584 + HP15_192 0.30 +1.5 181,592 - HP15_192 0.32 +1.2 181,602 + HP15_192 0.36 +1.5 181,634 + HP15_192 0.46 +2.3 181,661 + HP15_192 0.55 +0.1 181,669 - HP15_192 0.58 +0.2 181,669 - HP15_192 0.58 -0.0 181,698 - HP15_192 0.67 +1.8 181,716 - HP15_192 0.73 +0.5 181,716 - HP15_192 0.73 +2.0 181,732 - HP15_192 0.79 +0.2 181,751 + HP15_192 0.85 +1.5 181,790 + -0.7 181,826 - HP15_193 0.13 +0.2 181,838 + HP15_193 0.17 -0.5 181,857 + HP15_193 0.25 -1.2 181,857 + HP15_193 0.25 -0.7 181,890 + HP15_193 0.37 +1.6 181,957 - HP15_193 0.63 -0.2 181,959 + HP15_193 0.64 +1.7 181,959 + HP15_193 0.64 +0.5 181,967 - HP15_193 0.67 -0.3 181,975 - HP15_193 0.70 -0.4
Or see this region's nucleotide sequence