Strain Fitness in Marinobacter adhaerens HP15 around HP15_1833

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1832 and HP15_1833 are separated by 42 nucleotidesHP15_1833 and HP15_1834 are separated by 16 nucleotides HP15_1832: HP15_1832 - 3-isopropylmalate dehydrogenase, at 1,931,640 to 1,932,731 _1832 HP15_1833: HP15_1833 - isopropylmalate isomerase small subunit, at 1,932,774 to 1,933,421 _1833 HP15_1834: HP15_1834 - protein containing 3-isopropylmalate dehydratase, large subunit region domain, at 1,933,438 to 1,934,856 _1834 Position (kb) 1932 1933 1934Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1931.902 kb on - strand, within HP15_1832at 1932.029 kb on - strand, within HP15_1832at 1932.062 kb on + strand, within HP15_1832at 1932.225 kb on + strand, within HP15_1832at 1932.233 kb on - strand, within HP15_1832at 1932.234 kb on + strand, within HP15_1832at 1932.386 kb on + strand, within HP15_1832at 1932.421 kb on - strand, within HP15_1832at 1932.449 kb on - strand, within HP15_1832at 1932.584 kb on + strand, within HP15_1832at 1932.711 kb on - strandat 1932.842 kb on - strand, within HP15_1833at 1933.149 kb on + strand, within HP15_1833at 1933.182 kb on + strand, within HP15_1833at 1933.201 kb on + strand, within HP15_1833at 1933.367 kb on + strandat 1933.423 kb on + strandat 1933.449 kb on - strandat 1933.547 kb on + strandat 1933.568 kb on + strandat 1933.666 kb on + strand, within HP15_1834at 1933.726 kb on - strand, within HP15_1834at 1933.873 kb on - strand, within HP15_1834at 1934.062 kb on + strand, within HP15_1834at 1934.331 kb on - strand, within HP15_1834

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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1,931,902 - HP15_1832 0.24 -1.5
1,932,029 - HP15_1832 0.36 -2.3
1,932,062 + HP15_1832 0.39 -1.5
1,932,225 + HP15_1832 0.54 -2.2
1,932,233 - HP15_1832 0.54 -1.8
1,932,234 + HP15_1832 0.54 -3.1
1,932,386 + HP15_1832 0.68 -1.4
1,932,421 - HP15_1832 0.72 -4.4
1,932,449 - HP15_1832 0.74 +0.6
1,932,584 + HP15_1832 0.86 -0.1
1,932,711 - +0.5
1,932,842 - HP15_1833 0.10 -3.0
1,933,149 + HP15_1833 0.58 -3.6
1,933,182 + HP15_1833 0.63 -0.7
1,933,201 + HP15_1833 0.66 -0.7
1,933,367 + -2.5
1,933,423 + -1.5
1,933,449 - +0.1
1,933,547 + -3.2
1,933,568 + -0.0
1,933,666 + HP15_1834 0.16 -2.1
1,933,726 - HP15_1834 0.20 -0.9
1,933,873 - HP15_1834 0.31 -0.8
1,934,062 + HP15_1834 0.44 -4.7
1,934,331 - HP15_1834 0.63 +0.1

Or see this region's nucleotide sequence