Strain Fitness in Marinobacter adhaerens HP15 around HP15_1351

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1349 and HP15_1350 overlap by 4 nucleotidesHP15_1350 and HP15_1351 overlap by 4 nucleotidesHP15_1351 and HP15_1352 are separated by 38 nucleotides HP15_1349: HP15_1349 - membrane-fusion protein, at 1,417,406 to 1,418,332 _1349 HP15_1350: HP15_1350 - ATP-binding component of a transport system, at 1,418,329 to 1,419,255 _1350 HP15_1351: HP15_1351 - ABC-type multidrug transport system, permease component, at 1,419,252 to 1,420,397 _1351 HP15_1352: HP15_1352 - peptidase S16, lon domain protein, at 1,420,436 to 1,422,835 _1352 Position (kb) 1419 1420 1421Strain fitness (log2 ratio) -2 -1 0 1 2at 1418.340 kb on + strandat 1418.789 kb on + strand, within HP15_1350at 1418.797 kb on - strand, within HP15_1350at 1418.924 kb on - strand, within HP15_1350at 1419.008 kb on + strand, within HP15_1350at 1419.108 kb on + strand, within HP15_1350at 1419.116 kb on - strand, within HP15_1350at 1419.249 kb on + strandat 1419.259 kb on + strandat 1419.299 kb on - strandat 1419.378 kb on - strand, within HP15_1351at 1419.539 kb on + strand, within HP15_1351at 1419.701 kb on - strand, within HP15_1351at 1419.771 kb on - strand, within HP15_1351at 1419.771 kb on - strand, within HP15_1351at 1419.779 kb on + strand, within HP15_1351at 1419.836 kb on - strand, within HP15_1351at 1419.859 kb on + strand, within HP15_1351at 1419.942 kb on - strand, within HP15_1351at 1420.030 kb on - strand, within HP15_1351at 1420.089 kb on + strand, within HP15_1351at 1420.122 kb on + strand, within HP15_1351at 1420.143 kb on + strand, within HP15_1351at 1420.232 kb on - strand, within HP15_1351at 1420.292 kb on - strandat 1420.375 kb on + strandat 1420.397 kb on + strandat 1420.476 kb on - strandat 1420.544 kb on + strandat 1420.566 kb on + strandat 1420.632 kb on - strandat 1420.674 kb on + strandat 1420.717 kb on - strand, within HP15_1352at 1421.127 kb on + strand, within HP15_1352at 1421.168 kb on + strand, within HP15_1352at 1421.320 kb on + strand, within HP15_1352at 1421.346 kb on - strand, within HP15_1352

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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1,418,340 + +1.4
1,418,789 + HP15_1350 0.50 -1.7
1,418,797 - HP15_1350 0.50 +2.0
1,418,924 - HP15_1350 0.64 +0.4
1,419,008 + HP15_1350 0.73 +1.6
1,419,108 + HP15_1350 0.84 +2.6
1,419,116 - HP15_1350 0.85 +1.9
1,419,249 + +0.4
1,419,259 + +2.3
1,419,299 - +0.8
1,419,378 - HP15_1351 0.11 -2.7
1,419,539 + HP15_1351 0.25 -0.1
1,419,701 - HP15_1351 0.39 -0.5
1,419,771 - HP15_1351 0.45 +1.5
1,419,771 - HP15_1351 0.45 -0.7
1,419,779 + HP15_1351 0.46 -0.5
1,419,836 - HP15_1351 0.51 -0.8
1,419,859 + HP15_1351 0.53 -0.5
1,419,942 - HP15_1351 0.60 -0.3
1,420,030 - HP15_1351 0.68 -0.9
1,420,089 + HP15_1351 0.73 -0.1
1,420,122 + HP15_1351 0.76 +1.9
1,420,143 + HP15_1351 0.78 +0.0
1,420,232 - HP15_1351 0.86 -0.5
1,420,292 - -0.9
1,420,375 + -0.1
1,420,397 + +0.2
1,420,476 - +0.1
1,420,544 + +1.5
1,420,566 + -0.5
1,420,632 - +1.0
1,420,674 + +0.5
1,420,717 - HP15_1352 0.12 +1.3
1,421,127 + HP15_1352 0.29 +1.5
1,421,168 + HP15_1352 0.30 +1.7
1,421,320 + HP15_1352 0.37 -0.6
1,421,346 - HP15_1352 0.38 +0.1

Or see this region's nucleotide sequence