Strain Fitness in Marinobacter adhaerens HP15 around HP15_1307

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1306 and HP15_1307 are separated by 69 nucleotidesHP15_1307 and HP15_1308 are separated by 0 nucleotidesHP15_1308 and HP15_1309 are separated by 50 nucleotides HP15_1306: HP15_1306 - protein containing DUF1631, at 1,365,392 to 1,367,689 _1306 HP15_1307: HP15_1307 - N-acetyl-anhydromuranmyl-L-alanine amidase, at 1,367,759 to 1,368,385 _1307 HP15_1308: HP15_1308 - signaling modulator of AmpD, AmpE, at 1,368,386 to 1,368,901 _1308 HP15_1309: HP15_1309 - signaling modulator of AmpD, AmpE, at 1,368,952 to 1,369,272 _1309 Position (kb) 1367 1368 1369Strain fitness (log2 ratio) -2 -1 0 1 2at 1366.958 kb on - strand, within HP15_1306at 1367.003 kb on - strand, within HP15_1306at 1367.025 kb on - strand, within HP15_1306at 1367.025 kb on - strand, within HP15_1306at 1367.063 kb on + strand, within HP15_1306at 1367.073 kb on + strand, within HP15_1306at 1367.078 kb on + strand, within HP15_1306at 1367.212 kb on - strand, within HP15_1306at 1367.233 kb on - strand, within HP15_1306at 1367.291 kb on - strand, within HP15_1306at 1367.334 kb on + strand, within HP15_1306at 1367.436 kb on + strand, within HP15_1306at 1367.632 kb on - strandat 1367.702 kb on - strandat 1368.347 kb on + strandat 1368.438 kb on + strand, within HP15_1308at 1368.463 kb on + strand, within HP15_1308at 1368.471 kb on - strand, within HP15_1308at 1368.504 kb on - strand, within HP15_1308at 1368.692 kb on - strand, within HP15_1308at 1368.719 kb on + strand, within HP15_1308at 1368.719 kb on + strand, within HP15_1308at 1368.750 kb on - strand, within HP15_1308at 1368.793 kb on + strand, within HP15_1308at 1368.799 kb on + strand, within HP15_1308at 1368.799 kb on + strand, within HP15_1308at 1368.799 kb on + strand, within HP15_1308at 1368.807 kb on - strand, within HP15_1308at 1368.851 kb on + strandat 1368.888 kb on - strandat 1369.156 kb on + strand, within HP15_1309

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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1,366,958 - HP15_1306 0.68 +0.3
1,367,003 - HP15_1306 0.70 -0.0
1,367,025 - HP15_1306 0.71 -1.2
1,367,025 - HP15_1306 0.71 +1.4
1,367,063 + HP15_1306 0.73 +1.8
1,367,073 + HP15_1306 0.73 +1.2
1,367,078 + HP15_1306 0.73 -0.2
1,367,212 - HP15_1306 0.79 +1.8
1,367,233 - HP15_1306 0.80 -2.1
1,367,291 - HP15_1306 0.83 -0.2
1,367,334 + HP15_1306 0.85 -1.3
1,367,436 + HP15_1306 0.89 +1.9
1,367,632 - +0.1
1,367,702 - -1.0
1,368,347 + +1.9
1,368,438 + HP15_1308 0.10 +1.4
1,368,463 + HP15_1308 0.15 +0.2
1,368,471 - HP15_1308 0.16 -0.4
1,368,504 - HP15_1308 0.23 -0.2
1,368,692 - HP15_1308 0.59 -0.1
1,368,719 + HP15_1308 0.65 +1.2
1,368,719 + HP15_1308 0.65 -0.7
1,368,750 - HP15_1308 0.71 +0.3
1,368,793 + HP15_1308 0.79 -0.3
1,368,799 + HP15_1308 0.80 -0.2
1,368,799 + HP15_1308 0.80 -0.9
1,368,799 + HP15_1308 0.80 -0.1
1,368,807 - HP15_1308 0.82 -0.2
1,368,851 + -0.5
1,368,888 - -1.0
1,369,156 + HP15_1309 0.64 +1.0

Or see this region's nucleotide sequence