Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1162 and HP15_1163 overlap by 4 nucleotides HP15_1163 and HP15_1164 are separated by 0 nucleotides HP15_1164 and HP15_1166 are separated by 159 nucleotides
HP15_1162: HP15_1162 - aminotransferase, class I and II, at 1,194,079 to 1,195,281
_1162
HP15_1163: HP15_1163 - [protein-PII] uridylyltransferase, at 1,195,278 to 1,197,923
_1163
HP15_1164: HP15_1164 - methionine aminopeptidase, type I, at 1,197,924 to 1,198,694
_1164
HP15_1166: HP15_1166 - hypothetical protein, at 1,198,854 to 1,198,991
_1166
Position (kb)
1195
1196
1197
1198 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1194.582 kb on - strand, within HP15_1162 at 1194.636 kb on + strand, within HP15_1162 at 1194.858 kb on - strand, within HP15_1162 at 1194.930 kb on + strand, within HP15_1162 at 1194.957 kb on - strand, within HP15_1162 at 1195.087 kb on - strand, within HP15_1162 at 1195.700 kb on + strand, within HP15_1163 at 1195.708 kb on - strand, within HP15_1163 at 1195.715 kb on + strand, within HP15_1163 at 1195.802 kb on - strand, within HP15_1163 at 1196.067 kb on + strand, within HP15_1163 at 1196.075 kb on + strand, within HP15_1163 at 1196.086 kb on + strand, within HP15_1163 at 1196.120 kb on - strand, within HP15_1163 at 1196.157 kb on - strand, within HP15_1163 at 1196.279 kb on + strand, within HP15_1163 at 1196.697 kb on - strand, within HP15_1163 at 1196.936 kb on + strand, within HP15_1163 at 1197.011 kb on - strand, within HP15_1163 at 1197.011 kb on - strand, within HP15_1163 at 1197.073 kb on - strand, within HP15_1163 at 1197.225 kb on + strand, within HP15_1163 at 1197.233 kb on - strand, within HP15_1163 at 1197.240 kb on + strand, within HP15_1163 at 1197.406 kb on + strand, within HP15_1163 at 1197.406 kb on + strand, within HP15_1163 at 1197.429 kb on - strand, within HP15_1163 at 1197.429 kb on - strand, within HP15_1163 at 1197.450 kb on + strand, within HP15_1163 at 1197.568 kb on - strand, within HP15_1163 at 1197.710 kb on - strand at 1197.778 kb on + strand at 1197.786 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 1,194,582 - HP15_1162 0.42 -0.6 1,194,636 + HP15_1162 0.46 +1.7 1,194,858 - HP15_1162 0.65 -0.0 1,194,930 + HP15_1162 0.71 +1.4 1,194,957 - HP15_1162 0.73 +1.5 1,195,087 - HP15_1162 0.84 -0.6 1,195,700 + HP15_1163 0.16 -0.6 1,195,708 - HP15_1163 0.16 +1.3 1,195,715 + HP15_1163 0.17 -1.3 1,195,802 - HP15_1163 0.20 -0.6 1,196,067 + HP15_1163 0.30 -1.9 1,196,075 + HP15_1163 0.30 -0.8 1,196,086 + HP15_1163 0.31 -0.8 1,196,120 - HP15_1163 0.32 -0.6 1,196,157 - HP15_1163 0.33 -1.0 1,196,279 + HP15_1163 0.38 -0.4 1,196,697 - HP15_1163 0.54 -1.3 1,196,936 + HP15_1163 0.63 -0.6 1,197,011 - HP15_1163 0.65 -0.7 1,197,011 - HP15_1163 0.65 -0.0 1,197,073 - HP15_1163 0.68 -1.8 1,197,225 + HP15_1163 0.74 -1.9 1,197,233 - HP15_1163 0.74 -1.2 1,197,240 + HP15_1163 0.74 -1.6 1,197,406 + HP15_1163 0.80 -1.8 1,197,406 + HP15_1163 0.80 -0.3 1,197,429 - HP15_1163 0.81 +1.1 1,197,429 - HP15_1163 0.81 -1.5 1,197,450 + HP15_1163 0.82 +1.8 1,197,568 - HP15_1163 0.87 -0.5 1,197,710 - +0.7 1,197,778 + +1.2 1,197,786 - +0.8
Or see this region's nucleotide sequence