Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1034 and HP15_1035 are separated by 102 nucleotides HP15_1035 and HP15_1036 are separated by 214 nucleotides
HP15_1034: HP15_1034 - Zn-dependent alcohol dehydrogenase, at 1,052,793 to 1,053,851
_1034
HP15_1035: HP15_1035 - phenazine biosynthesis protein, PhzF family, at 1,053,954 to 1,054,757
_1035
HP15_1036: HP15_1036 - transcriptional regulator, GntR family with aminotransferase domain protein, at 1,054,972 to 1,056,414
_1036
Position (kb)
1053
1054
1055 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1053.177 kb on - strand, within HP15_1034 at 1053.354 kb on + strand, within HP15_1034 at 1053.370 kb on + strand, within HP15_1034 at 1053.370 kb on + strand, within HP15_1034 at 1053.448 kb on - strand, within HP15_1034 at 1053.497 kb on - strand, within HP15_1034 at 1053.504 kb on + strand, within HP15_1034 at 1053.531 kb on - strand, within HP15_1034 at 1053.608 kb on + strand, within HP15_1034 at 1053.645 kb on - strand, within HP15_1034 at 1053.803 kb on + strand at 1053.941 kb on + strand at 1054.070 kb on + strand, within HP15_1035 at 1054.204 kb on + strand, within HP15_1035 at 1054.222 kb on - strand, within HP15_1035 at 1054.232 kb on + strand, within HP15_1035 at 1054.255 kb on - strand, within HP15_1035 at 1054.286 kb on + strand, within HP15_1035 at 1054.341 kb on + strand, within HP15_1035 at 1054.341 kb on + strand, within HP15_1035 at 1054.349 kb on - strand, within HP15_1035 at 1054.351 kb on + strand, within HP15_1035 at 1054.394 kb on - strand, within HP15_1035 at 1054.502 kb on - strand, within HP15_1035 at 1054.511 kb on - strand, within HP15_1035 at 1054.515 kb on + strand, within HP15_1035 at 1054.546 kb on + strand, within HP15_1035 at 1054.564 kb on - strand, within HP15_1035 at 1054.564 kb on - strand, within HP15_1035 at 1054.733 kb on - strand at 1054.747 kb on + strand at 1054.761 kb on - strand at 1054.838 kb on - strand at 1054.902 kb on - strand at 1054.919 kb on + strand at 1054.929 kb on + strand at 1055.053 kb on + strand at 1055.162 kb on + strand, within HP15_1036 at 1055.182 kb on - strand, within HP15_1036 at 1055.230 kb on + strand, within HP15_1036 at 1055.265 kb on - strand, within HP15_1036 at 1055.282 kb on + strand, within HP15_1036 at 1055.282 kb on + strand, within HP15_1036 at 1055.290 kb on - strand, within HP15_1036 at 1055.325 kb on + strand, within HP15_1036 at 1055.351 kb on + strand, within HP15_1036 at 1055.376 kb on - strand, within HP15_1036 at 1055.418 kb on - strand, within HP15_1036 at 1055.630 kb on + strand, within HP15_1036 at 1055.676 kb on - strand, within HP15_1036 at 1055.677 kb on - strand, within HP15_1036 at 1055.696 kb on + strand, within HP15_1036 at 1055.696 kb on + strand, within HP15_1036 at 1055.696 kb on + strand, within HP15_1036 at 1055.748 kb on + strand, within HP15_1036 at 1055.756 kb on - strand, within HP15_1036 at 1055.756 kb on - strand, within HP15_1036
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 1,053,177 - HP15_1034 0.36 -2.0 1,053,354 + HP15_1034 0.53 -0.5 1,053,370 + HP15_1034 0.54 +1.4 1,053,370 + HP15_1034 0.54 -0.9 1,053,448 - HP15_1034 0.62 +1.6 1,053,497 - HP15_1034 0.66 -1.4 1,053,504 + HP15_1034 0.67 -0.3 1,053,531 - HP15_1034 0.70 -0.6 1,053,608 + HP15_1034 0.77 +0.0 1,053,645 - HP15_1034 0.80 +1.8 1,053,803 + -0.6 1,053,941 + -0.7 1,054,070 + HP15_1035 0.14 -1.0 1,054,204 + HP15_1035 0.31 -0.2 1,054,222 - HP15_1035 0.33 -0.6 1,054,232 + HP15_1035 0.35 +2.1 1,054,255 - HP15_1035 0.37 -0.1 1,054,286 + HP15_1035 0.41 -0.3 1,054,341 + HP15_1035 0.48 +0.2 1,054,341 + HP15_1035 0.48 -0.4 1,054,349 - HP15_1035 0.49 -0.1 1,054,351 + HP15_1035 0.49 -0.4 1,054,394 - HP15_1035 0.55 -0.3 1,054,502 - HP15_1035 0.68 +1.5 1,054,511 - HP15_1035 0.69 -0.6 1,054,515 + HP15_1035 0.70 -0.5 1,054,546 + HP15_1035 0.74 -1.4 1,054,564 - HP15_1035 0.76 +1.1 1,054,564 - HP15_1035 0.76 -0.7 1,054,733 - -0.2 1,054,747 + +1.8 1,054,761 - +1.3 1,054,838 - -0.7 1,054,902 - +0.2 1,054,919 + +2.2 1,054,929 + -0.4 1,055,053 + +0.9 1,055,162 + HP15_1036 0.13 -0.7 1,055,182 - HP15_1036 0.15 -0.2 1,055,230 + HP15_1036 0.18 +1.6 1,055,265 - HP15_1036 0.20 -1.3 1,055,282 + HP15_1036 0.21 +1.6 1,055,282 + HP15_1036 0.21 +0.3 1,055,290 - HP15_1036 0.22 +1.8 1,055,325 + HP15_1036 0.24 -2.2 1,055,351 + HP15_1036 0.26 -1.1 1,055,376 - HP15_1036 0.28 -0.3 1,055,418 - HP15_1036 0.31 +0.4 1,055,630 + HP15_1036 0.46 +1.1 1,055,676 - HP15_1036 0.49 +1.8 1,055,677 - HP15_1036 0.49 +1.7 1,055,696 + HP15_1036 0.50 -0.3 1,055,696 + HP15_1036 0.50 +0.7 1,055,696 + HP15_1036 0.50 +1.1 1,055,748 + HP15_1036 0.54 +0.4 1,055,756 - HP15_1036 0.54 +0.8 1,055,756 - HP15_1036 0.54 +0.9
Or see this region's nucleotide sequence