Strain Fitness in Marinobacter adhaerens HP15 around HP15_1035

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1034 and HP15_1035 are separated by 102 nucleotidesHP15_1035 and HP15_1036 are separated by 214 nucleotides HP15_1034: HP15_1034 - Zn-dependent alcohol dehydrogenase, at 1,052,793 to 1,053,851 _1034 HP15_1035: HP15_1035 - phenazine biosynthesis protein, PhzF family, at 1,053,954 to 1,054,757 _1035 HP15_1036: HP15_1036 - transcriptional regulator, GntR family with aminotransferase domain protein, at 1,054,972 to 1,056,414 _1036 Position (kb) 1053 1054 1055Strain fitness (log2 ratio) -2 -1 0 1 2at 1053.177 kb on - strand, within HP15_1034at 1053.354 kb on + strand, within HP15_1034at 1053.370 kb on + strand, within HP15_1034at 1053.370 kb on + strand, within HP15_1034at 1053.448 kb on - strand, within HP15_1034at 1053.497 kb on - strand, within HP15_1034at 1053.504 kb on + strand, within HP15_1034at 1053.531 kb on - strand, within HP15_1034at 1053.608 kb on + strand, within HP15_1034at 1053.645 kb on - strand, within HP15_1034at 1053.803 kb on + strandat 1053.941 kb on + strandat 1054.070 kb on + strand, within HP15_1035at 1054.204 kb on + strand, within HP15_1035at 1054.222 kb on - strand, within HP15_1035at 1054.232 kb on + strand, within HP15_1035at 1054.255 kb on - strand, within HP15_1035at 1054.286 kb on + strand, within HP15_1035at 1054.341 kb on + strand, within HP15_1035at 1054.341 kb on + strand, within HP15_1035at 1054.349 kb on - strand, within HP15_1035at 1054.351 kb on + strand, within HP15_1035at 1054.394 kb on - strand, within HP15_1035at 1054.502 kb on - strand, within HP15_1035at 1054.511 kb on - strand, within HP15_1035at 1054.515 kb on + strand, within HP15_1035at 1054.546 kb on + strand, within HP15_1035at 1054.564 kb on - strand, within HP15_1035at 1054.564 kb on - strand, within HP15_1035at 1054.733 kb on - strandat 1054.747 kb on + strandat 1054.761 kb on - strandat 1054.838 kb on - strandat 1054.902 kb on - strandat 1054.919 kb on + strandat 1054.929 kb on + strandat 1055.053 kb on + strandat 1055.162 kb on + strand, within HP15_1036at 1055.182 kb on - strand, within HP15_1036at 1055.230 kb on + strand, within HP15_1036at 1055.265 kb on - strand, within HP15_1036at 1055.282 kb on + strand, within HP15_1036at 1055.282 kb on + strand, within HP15_1036at 1055.290 kb on - strand, within HP15_1036at 1055.325 kb on + strand, within HP15_1036at 1055.351 kb on + strand, within HP15_1036at 1055.376 kb on - strand, within HP15_1036at 1055.418 kb on - strand, within HP15_1036at 1055.630 kb on + strand, within HP15_1036at 1055.676 kb on - strand, within HP15_1036at 1055.677 kb on - strand, within HP15_1036at 1055.696 kb on + strand, within HP15_1036at 1055.696 kb on + strand, within HP15_1036at 1055.696 kb on + strand, within HP15_1036at 1055.748 kb on + strand, within HP15_1036at 1055.756 kb on - strand, within HP15_1036at 1055.756 kb on - strand, within HP15_1036

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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1,053,177 - HP15_1034 0.36 -2.0
1,053,354 + HP15_1034 0.53 -0.5
1,053,370 + HP15_1034 0.54 +1.4
1,053,370 + HP15_1034 0.54 -0.9
1,053,448 - HP15_1034 0.62 +1.6
1,053,497 - HP15_1034 0.66 -1.4
1,053,504 + HP15_1034 0.67 -0.3
1,053,531 - HP15_1034 0.70 -0.6
1,053,608 + HP15_1034 0.77 +0.0
1,053,645 - HP15_1034 0.80 +1.8
1,053,803 + -0.6
1,053,941 + -0.7
1,054,070 + HP15_1035 0.14 -1.0
1,054,204 + HP15_1035 0.31 -0.2
1,054,222 - HP15_1035 0.33 -0.6
1,054,232 + HP15_1035 0.35 +2.1
1,054,255 - HP15_1035 0.37 -0.1
1,054,286 + HP15_1035 0.41 -0.3
1,054,341 + HP15_1035 0.48 +0.2
1,054,341 + HP15_1035 0.48 -0.4
1,054,349 - HP15_1035 0.49 -0.1
1,054,351 + HP15_1035 0.49 -0.4
1,054,394 - HP15_1035 0.55 -0.3
1,054,502 - HP15_1035 0.68 +1.5
1,054,511 - HP15_1035 0.69 -0.6
1,054,515 + HP15_1035 0.70 -0.5
1,054,546 + HP15_1035 0.74 -1.4
1,054,564 - HP15_1035 0.76 +1.1
1,054,564 - HP15_1035 0.76 -0.7
1,054,733 - -0.2
1,054,747 + +1.8
1,054,761 - +1.3
1,054,838 - -0.7
1,054,902 - +0.2
1,054,919 + +2.2
1,054,929 + -0.4
1,055,053 + +0.9
1,055,162 + HP15_1036 0.13 -0.7
1,055,182 - HP15_1036 0.15 -0.2
1,055,230 + HP15_1036 0.18 +1.6
1,055,265 - HP15_1036 0.20 -1.3
1,055,282 + HP15_1036 0.21 +1.6
1,055,282 + HP15_1036 0.21 +0.3
1,055,290 - HP15_1036 0.22 +1.8
1,055,325 + HP15_1036 0.24 -2.2
1,055,351 + HP15_1036 0.26 -1.1
1,055,376 - HP15_1036 0.28 -0.3
1,055,418 - HP15_1036 0.31 +0.4
1,055,630 + HP15_1036 0.46 +1.1
1,055,676 - HP15_1036 0.49 +1.8
1,055,677 - HP15_1036 0.49 +1.7
1,055,696 + HP15_1036 0.50 -0.3
1,055,696 + HP15_1036 0.50 +0.7
1,055,696 + HP15_1036 0.50 +1.1
1,055,748 + HP15_1036 0.54 +0.4
1,055,756 - HP15_1036 0.54 +0.8
1,055,756 - HP15_1036 0.54 +0.9

Or see this region's nucleotide sequence