Experiment: Nickel (II) chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0806 and hpt-1 are separated by 317 nucleotides hpt-1 and SO0808 are separated by 366 nucleotides SO0808 and azu are separated by 100 nucleotides
SO0806: SO0806 - alkaline phosphatase, putative (NCBI ptt file), at 817,728 to 819,494
SO0806
SO0807: hpt-1 - hypoxanthine-guanine phosphoribosyltransferase (NCBI ptt file), at 819,812 to 820,378
hpt-1
SO0808: SO0808 - conserved hypothetical protein (NCBI ptt file), at 820,745 to 821,050
SO0808
SO0809: azu - azurin precursor (NCBI ptt file), at 821,151 to 821,627
azu
Position (kb) 819
820
821 Strain fitness (log2 ratio) -2
-1
0
1 at 818.823 kb on + strand, within SO0806 at 818.926 kb on + strand, within SO0806 at 818.975 kb on - strand, within SO0806 at 819.002 kb on - strand, within SO0806 at 819.228 kb on - strand, within SO0806 at 819.228 kb on - strand, within SO0806 at 819.267 kb on + strand, within SO0806 at 819.280 kb on - strand, within SO0806 at 819.352 kb on + strand at 819.360 kb on - strand at 819.397 kb on - strand at 819.428 kb on + strand at 819.474 kb on + strand at 819.526 kb on - strand at 819.543 kb on + strand at 819.551 kb on - strand at 819.935 kb on - strand, within hpt-1 at 819.950 kb on + strand, within hpt-1 at 820.066 kb on + strand, within hpt-1 at 820.066 kb on + strand, within hpt-1 at 820.131 kb on - strand, within hpt-1 at 820.140 kb on + strand, within hpt-1 at 820.187 kb on - strand, within hpt-1 at 820.318 kb on - strand, within hpt-1 at 820.336 kb on + strand at 820.337 kb on + strand at 820.344 kb on - strand at 820.344 kb on - strand at 820.449 kb on + strand at 820.486 kb on + strand at 820.487 kb on + strand at 820.495 kb on - strand at 820.893 kb on - strand, within SO0808 at 820.896 kb on + strand, within SO0808 at 820.931 kb on - strand, within SO0808 at 820.935 kb on - strand, within SO0808 at 821.045 kb on + strand at 821.175 kb on - strand at 821.247 kb on + strand, within azu at 821.264 kb on - strand, within azu
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.25 mM remove 818,823 + SO0806 0.62 +0.6 818,926 + SO0806 0.68 -0.2 818,975 - SO0806 0.71 +0.3 819,002 - SO0806 0.72 -0.2 819,228 - SO0806 0.85 +0.4 819,228 - SO0806 0.85 +0.7 819,267 + SO0806 0.87 +0.1 819,280 - SO0806 0.88 +0.0 819,352 + -0.6 819,360 - +0.0 819,397 - +0.5 819,428 + -0.2 819,474 + +0.7 819,526 - -1.2 819,543 + -0.2 819,551 - +0.2 819,935 - hpt-1 SO0807 0.22 -1.6 819,950 + hpt-1 SO0807 0.24 -0.6 820,066 + hpt-1 SO0807 0.45 -0.9 820,066 + hpt-1 SO0807 0.45 -1.0 820,131 - hpt-1 SO0807 0.56 -0.2 820,140 + hpt-1 SO0807 0.58 -0.0 820,187 - hpt-1 SO0807 0.66 -0.4 820,318 - hpt-1 SO0807 0.89 -0.4 820,336 + +0.0 820,337 + -1.8 820,344 - -0.5 820,344 - +0.3 820,449 + -0.1 820,486 + +0.1 820,487 + +0.3 820,495 - +0.3 820,893 - SO0808 0.48 +1.2 820,896 + SO0808 0.49 -1.3 820,931 - SO0808 0.61 +0.7 820,935 - SO0808 0.62 +0.8 821,045 + +0.6 821,175 - +0.6 821,247 + azu SO0809 0.20 +0.3 821,264 - azu SO0809 0.24 +0.2
Or see this region's nucleotide sequence