Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4091 and HP15_4092 are separated by 3 nucleotides HP15_4092 and HP15_4093 are separated by 141 nucleotides
HP15_4091: HP15_4091 - oxidoreductase, FAD/iron-sulfur cluster-binding domain protein, at 4,323,537 to 4,326,353
_4091
HP15_4092: HP15_4092 - nitroreductase A, at 4,326,357 to 4,327,094
_4092
HP15_4093: HP15_4093 - membrane protein containing diguanylate cyclase, predicted domains, at 4,327,236 to 4,328,426
_4093
Position (kb)
4326
4327
4328 Strain fitness (log2 ratio)
-2
-1
0
1 at 4325.392 kb on + strand, within HP15_4091 at 4325.400 kb on - strand, within HP15_4091 at 4325.414 kb on - strand, within HP15_4091 at 4325.435 kb on + strand, within HP15_4091 at 4325.469 kb on + strand, within HP15_4091 at 4325.509 kb on - strand, within HP15_4091 at 4325.514 kb on + strand, within HP15_4091 at 4325.525 kb on + strand, within HP15_4091 at 4325.585 kb on + strand, within HP15_4091 at 4325.593 kb on - strand, within HP15_4091 at 4325.701 kb on - strand, within HP15_4091 at 4325.775 kb on + strand, within HP15_4091 at 4325.783 kb on - strand, within HP15_4091 at 4325.783 kb on - strand, within HP15_4091 at 4325.783 kb on - strand, within HP15_4091 at 4325.783 kb on - strand, within HP15_4091 at 4325.895 kb on - strand, within HP15_4091 at 4325.925 kb on + strand, within HP15_4091 at 4325.966 kb on + strand, within HP15_4091 at 4325.974 kb on - strand, within HP15_4091 at 4326.014 kb on - strand, within HP15_4091 at 4326.019 kb on + strand, within HP15_4091 at 4326.068 kb on - strand, within HP15_4091 at 4326.115 kb on - strand at 4326.126 kb on - strand at 4326.128 kb on + strand at 4326.240 kb on + strand at 4326.435 kb on - strand, within HP15_4092 at 4326.437 kb on + strand, within HP15_4092 at 4326.445 kb on - strand, within HP15_4092 at 4326.445 kb on - strand, within HP15_4092 at 4326.455 kb on - strand, within HP15_4092 at 4326.481 kb on - strand, within HP15_4092 at 4326.580 kb on + strand, within HP15_4092 at 4326.602 kb on - strand, within HP15_4092 at 4326.607 kb on - strand, within HP15_4092 at 4326.614 kb on + strand, within HP15_4092 at 4326.676 kb on + strand, within HP15_4092 at 4326.684 kb on - strand, within HP15_4092 at 4326.697 kb on + strand, within HP15_4092 at 4326.702 kb on + strand, within HP15_4092 at 4326.763 kb on - strand, within HP15_4092 at 4326.783 kb on - strand, within HP15_4092 at 4326.790 kb on + strand, within HP15_4092 at 4326.796 kb on - strand, within HP15_4092 at 4326.811 kb on + strand, within HP15_4092 at 4326.838 kb on - strand, within HP15_4092 at 4326.886 kb on + strand, within HP15_4092 at 4326.886 kb on + strand, within HP15_4092 at 4326.894 kb on - strand, within HP15_4092 at 4327.091 kb on - strand at 4327.098 kb on + strand at 4327.118 kb on - strand at 4327.173 kb on + strand at 4327.173 kb on + strand at 4327.186 kb on + strand at 4327.211 kb on + strand at 4327.224 kb on - strand at 4327.315 kb on - strand at 4327.360 kb on - strand, within HP15_4093 at 4327.360 kb on - strand, within HP15_4093 at 4327.447 kb on - strand, within HP15_4093 at 4327.500 kb on - strand, within HP15_4093 at 4327.500 kb on - strand, within HP15_4093 at 4327.506 kb on + strand, within HP15_4093 at 4327.593 kb on + strand, within HP15_4093 at 4327.651 kb on - strand, within HP15_4093 at 4327.735 kb on - strand, within HP15_4093 at 4327.878 kb on + strand, within HP15_4093 at 4327.901 kb on - strand, within HP15_4093 at 4327.906 kb on - strand, within HP15_4093 at 4327.935 kb on - strand, within HP15_4093 at 4327.988 kb on + strand, within HP15_4093
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 4,325,392 + HP15_4091 0.66 -1.2 4,325,400 - HP15_4091 0.66 +0.1 4,325,414 - HP15_4091 0.67 -0.7 4,325,435 + HP15_4091 0.67 +0.4 4,325,469 + HP15_4091 0.69 -0.8 4,325,509 - HP15_4091 0.70 +0.1 4,325,514 + HP15_4091 0.70 -0.4 4,325,525 + HP15_4091 0.71 -0.7 4,325,585 + HP15_4091 0.73 -1.9 4,325,593 - HP15_4091 0.73 +0.6 4,325,701 - HP15_4091 0.77 -1.0 4,325,775 + HP15_4091 0.79 -0.4 4,325,783 - HP15_4091 0.80 +0.1 4,325,783 - HP15_4091 0.80 +0.1 4,325,783 - HP15_4091 0.80 -1.0 4,325,783 - HP15_4091 0.80 +0.9 4,325,895 - HP15_4091 0.84 -0.7 4,325,925 + HP15_4091 0.85 -0.3 4,325,966 + HP15_4091 0.86 -0.6 4,325,974 - HP15_4091 0.87 +0.3 4,326,014 - HP15_4091 0.88 -0.6 4,326,019 + HP15_4091 0.88 -0.9 4,326,068 - HP15_4091 0.90 +0.3 4,326,115 - -0.6 4,326,126 - +0.4 4,326,128 + -0.4 4,326,240 + -0.3 4,326,435 - HP15_4092 0.11 -0.2 4,326,437 + HP15_4092 0.11 -0.1 4,326,445 - HP15_4092 0.12 -0.8 4,326,445 - HP15_4092 0.12 +0.5 4,326,455 - HP15_4092 0.13 -0.3 4,326,481 - HP15_4092 0.17 -0.3 4,326,580 + HP15_4092 0.30 -0.7 4,326,602 - HP15_4092 0.33 -0.0 4,326,607 - HP15_4092 0.34 -1.7 4,326,614 + HP15_4092 0.35 -0.7 4,326,676 + HP15_4092 0.43 -0.5 4,326,684 - HP15_4092 0.44 +0.5 4,326,697 + HP15_4092 0.46 -0.4 4,326,702 + HP15_4092 0.47 +0.5 4,326,763 - HP15_4092 0.55 +0.4 4,326,783 - HP15_4092 0.58 +0.5 4,326,790 + HP15_4092 0.59 -0.3 4,326,796 - HP15_4092 0.59 -0.5 4,326,811 + HP15_4092 0.62 +0.6 4,326,838 - HP15_4092 0.65 +0.0 4,326,886 + HP15_4092 0.72 -0.9 4,326,886 + HP15_4092 0.72 +0.1 4,326,894 - HP15_4092 0.73 +0.9 4,327,091 - +0.7 4,327,098 + +0.2 4,327,118 - -0.3 4,327,173 + +0.4 4,327,173 + -1.0 4,327,186 + -1.1 4,327,211 + -0.3 4,327,224 - -0.1 4,327,315 - -1.1 4,327,360 - HP15_4093 0.10 +0.8 4,327,360 - HP15_4093 0.10 +0.6 4,327,447 - HP15_4093 0.18 -0.2 4,327,500 - HP15_4093 0.22 +0.1 4,327,500 - HP15_4093 0.22 +0.1 4,327,506 + HP15_4093 0.23 -0.1 4,327,593 + HP15_4093 0.30 +0.4 4,327,651 - HP15_4093 0.35 -0.1 4,327,735 - HP15_4093 0.42 +0.6 4,327,878 + HP15_4093 0.54 +0.4 4,327,901 - HP15_4093 0.56 +0.6 4,327,906 - HP15_4093 0.56 -0.3 4,327,935 - HP15_4093 0.59 -0.2 4,327,988 + HP15_4093 0.63 -0.4
Or see this region's nucleotide sequence