Strain Fitness in Shewanella amazonensis SB2B around Sama_2148

Experiment: Minimal media, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_2146 and Sama_2147 are separated by 44 nucleotidesSama_2147 and Sama_2148 are separated by 104 nucleotidesSama_2148 and Sama_2149 are separated by 12 nucleotides Sama_2146: Sama_2146 - amidophosphoribosyltransferase (RefSeq), at 2,592,502 to 2,594,016 _2146 Sama_2147: Sama_2147 - colicin V production protein (RefSeq), at 2,594,061 to 2,594,549 _2147 Sama_2148: Sama_2148 - sporulation related (RefSeq), at 2,594,654 to 2,595,325 _2148 Sama_2149: Sama_2149 - FolC bifunctional protein (RefSeq), at 2,595,338 to 2,596,603 _2149 Position (kb) 2594 2595 2596Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 2593.964 kb on + strandat 2593.964 kb on + strandat 2593.965 kb on - strandat 2593.965 kb on - strandat 2593.965 kb on - strandat 2593.965 kb on - strandat 2593.965 kb on - strandat 2593.965 kb on - strandat 2593.965 kb on - strandat 2593.965 kb on - strandat 2593.965 kb on - strandat 2593.996 kb on + strandat 2594.008 kb on - strandat 2594.035 kb on - strandat 2594.064 kb on + strandat 2594.290 kb on - strand, within Sama_2147at 2594.306 kb on - strand, within Sama_2147at 2594.338 kb on - strand, within Sama_2147at 2594.349 kb on - strand, within Sama_2147at 2594.349 kb on - strand, within Sama_2147at 2594.417 kb on - strand, within Sama_2147at 2594.499 kb on - strand, within Sama_2147at 2594.534 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Minimal media, 30C
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2,593,964 + -4.2
2,593,964 + -1.7
2,593,965 - -3.4
2,593,965 - -7.0
2,593,965 - -2.4
2,593,965 - -3.0
2,593,965 - -3.5
2,593,965 - +1.2
2,593,965 - -2.0
2,593,965 - -1.5
2,593,965 - -2.3
2,593,996 + -3.1
2,594,008 - -1.7
2,594,035 - -1.5
2,594,064 + -1.4
2,594,290 - Sama_2147 0.47 -1.7
2,594,306 - Sama_2147 0.50 -0.2
2,594,338 - Sama_2147 0.57 -0.0
2,594,349 - Sama_2147 0.59 +0.0
2,594,349 - Sama_2147 0.59 +1.2
2,594,417 - Sama_2147 0.73 -0.5
2,594,499 - Sama_2147 0.90 +0.6
2,594,534 - +0.6

Or see this region's nucleotide sequence