Strain Fitness in Shewanella oneidensis MR-1 around SO2006

Experiment: Nickel (II) chloride 0.2 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nickel (II) chloride 0.2 mM
2,103,799	+		SO2004	0.20	+0.9
2,103,804	+		SO2004	0.21	-1.3
2,103,804	+		SO2004	0.21	+0.3
2,103,804	+		SO2004	0.21	-0.0
2,103,805	+		SO2004	0.21	-0.7
2,103,805	+		SO2004	0.21	+0.0
2,103,812	-		SO2004	0.23	-0.5
2,103,838	+		SO2004	0.28	+0.2
2,103,838	+		SO2004	0.28	+0.3
2,103,842	+		SO2004	0.29	+0.7
2,103,842	+		SO2004	0.29	+0.4
2,103,850	-		SO2004	0.31	-0.5
2,103,850	-		SO2004	0.31	-0.2
2,103,850	-		SO2004	0.31	-0.2
2,103,850	-		SO2004	0.31	+0.0
2,103,850	-		SO2004	0.31	+1.1
2,103,850	-		SO2004	0.31	-1.5
2,103,850	-		SO2004	0.31	+0.5
2,103,889	-		SO2004	0.39	-1.4
2,103,889	-		SO2004	0.39	+0.1
2,103,889	-		SO2004	0.39	-1.0
2,103,914	-		SO2004	0.44	+0.5
2,103,914	-		SO2004	0.44	-0.8
2,103,916	+		SO2004	0.44	+0.7
2,103,916	+		SO2004	0.44	+0.0
2,103,916	+		SO2004	0.44	-0.6
2,103,916	+		SO2004	0.44	-0.4
2,103,924	-		SO2004	0.46	+1.1
2,103,924	-		SO2004	0.46	+0.1
2,103,924	-		SO2004	0.46	-0.3
2,103,924	-		SO2004	0.46	-0.3
2,103,924	-		SO2004	0.46	+0.8
2,103,924	-		SO2004	0.46	+0.5
2,103,927	-		SO2004	0.47	+0.2
2,103,937	-		SO2004	0.49	+0.1
2,103,940	+		SO2004	0.49	-0.3
2,103,948	-		SO2004	0.51	+0.9
2,103,948	-		SO2004	0.51	+0.4
2,103,980	-		SO2004	0.58	-0.1
2,103,995	+		SO2004	0.61	+0.6
2,103,995	+		SO2004	0.61	-0.8
2,104,003	-		SO2004	0.62	-0.2
2,104,018	+		SO2004	0.66	+0.2
2,104,018	+		SO2004	0.66	-0.1
2,104,018	+		SO2004	0.66	-0.4
2,104,018	+		SO2004	0.66	-0.5
2,104,026	-		SO2004	0.67	-0.5
2,104,068	+		SO2004	0.76	+1.5
2,104,089	+		SO2004	0.80	-0.2
2,104,089	+		SO2004	0.80	+0.3
2,104,089	+		SO2004	0.80	+0.8
2,104,089	+		SO2004	0.80	+0.3
2,104,089	+		SO2004	0.80	+0.1
2,104,089	+		SO2004	0.80	+0.1
2,104,089	+		SO2004	0.80	+0.7
2,104,089	+		SO2004	0.80	-2.3
2,104,089	+		SO2004	0.80	-0.4
2,104,089	+		SO2004	0.80	+0.2
2,104,091	+		SO2004	0.81	+0.3
2,104,091	+		SO2004	0.81	-0.3
2,104,091	+		SO2004	0.81	+0.2
2,104,091	+		SO2004	0.81	+1.0
2,104,091	+		SO2004	0.81	-0.5
2,104,091	+		SO2004	0.81	-0.4
2,104,091	+		SO2004	0.81	+0.5
2,104,091	+		SO2004	0.81	-0.1
2,104,091	+		SO2004	0.81	-0.3
2,104,091	+		SO2004	0.81	-1.5
2,104,097	-		SO2004	0.82	+0.3
2,104,097	-		SO2004	0.82	+0.8
2,104,097	-		SO2004	0.82	+0.1
2,104,097	-		SO2004	0.82	-0.0
2,104,097	-		SO2004	0.82	-0.2
2,104,097	-		SO2004	0.82	+1.0
2,104,097	-		SO2004	0.82	+0.9
2,104,097	-		SO2004	0.82	+0.5
2,104,097	-		SO2004	0.82	-0.4
2,104,097	-		SO2004	0.82	+0.2
2,104,098	-		SO2004	0.82	+0.2
2,104,098	-		SO2004	0.82	-0.9
2,104,098	-		SO2004	0.82	-0.3
2,104,098	-		SO2004	0.82	-0.5
2,104,099	-		SO2004	0.82	+0.4
2,104,099	-		SO2004	0.82	+0.0
2,104,100	+		SO2004	0.83	+0.3
2,104,134	-		SO2004	0.90	-0.4
2,104,146	-				+0.2
2,104,146	-				+0.2
2,104,146	-				-0.4
2,104,146	-				+0.4
2,104,176	+				+0.2
2,104,191	+				-0.4
2,104,191	+				-0.2
2,104,201	-				+0.3
2,104,203	+				-0.5
2,104,203	+				-0.6
2,104,203	+				+0.5
2,104,211	-				-0.7
2,104,211	-				+0.1
2,104,211	-				+0.3
2,104,247	-				-0.4
2,104,254	+				-0.3
2,104,309	-		SO2005	0.14	+0.0
2,104,314	+		SO2005	0.16	-0.4
2,104,323	-		SO2005	0.18	-0.3
2,104,325	+		SO2005	0.19	-0.6
2,104,354	+		SO2005	0.27	+1.5
2,104,389	+		SO2005	0.37	+0.5
2,104,468	+		SO2005	0.59	+0.6
2,104,498	+		SO2005	0.67	+1.1
2,104,499	+		SO2005	0.67	+0.6
2,104,499	+		SO2005	0.67	+1.1
2,104,499	+		SO2005	0.67	+0.6
2,104,506	-		SO2005	0.69	+0.2
2,104,507	-		SO2005	0.69	+0.3
2,104,507	-		SO2005	0.69	+0.8
2,104,507	-		SO2005	0.69	-0.2
2,104,507	-		SO2005	0.69	-0.6
2,104,507	-		SO2005	0.69	-0.1
2,104,507	-		SO2005	0.69	-0.8
2,104,507	-		SO2005	0.69	-0.4
2,104,606	-				+0.2
2,104,718	+				+0.2
2,104,755	+				+1.1
2,104,763	+				-1.1
2,104,773	+				-0.4
2,104,784	+				-0.4
2,104,937	+		SO2006	0.19	+1.5
2,104,945	-		SO2006	0.20	+0.1
2,104,963	-		SO2006	0.22	+0.9
2,104,982	-		SO2006	0.24	-0.0
2,104,982	-		SO2006	0.24	+0.2
2,104,982	-		SO2006	0.24	-0.2
2,104,990	-		SO2006	0.24	+0.7
2,105,130	-		SO2006	0.39	+0.4
2,105,152	-		SO2006	0.42	+0.1
2,105,364	+		SO2006	0.64	+1.6
2,105,367	+		SO2006	0.64	+0.3
2,105,372	+		SO2006	0.65	+0.1
2,105,458	-		SO2006	0.74	+0.5
2,105,530	+		SO2006	0.81	+1.3
2,105,544	+		SO2006	0.83	+0.1
2,105,664	+				+0.4
2,105,713	+				+0.4
2,105,721	-				-0.2
2,105,746	+				+0.1
2,105,749	-				+0.5
2,105,760	+				+0.4
2,105,760	+				+0.2
2,105,762	+				+0.0
2,105,782	-				+0.0
2,105,785	-				-0.4
2,105,804	+				-0.0
2,105,817	-				-0.5
2,105,900	+				+0.5
2,105,933	+				-0.1
2,106,007	+				-0.9
2,106,022	-		SO2007	0.11	-0.7
2,106,134	-		SO2007	0.37	-0.1
2,106,192	+		SO2007	0.50	-0.5
2,106,193	+		SO2007	0.51	-0.7
2,106,229	+		SO2007	0.59	-0.3
2,106,252	-		SO2007	0.64	-0.6
2,106,310	+		SO2007	0.78	+0.2
2,106,325	+		SO2007	0.81	+0.6
2,106,385	+				-0.1
2,106,453	+				-0.4
2,106,495	-				+0.3
2,106,495	-				+0.1
2,106,519	+				-0.1
2,106,527	-				-0.6