Experiment: Nickel (II) chloride 0.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0863 and SO0864 are separated by 274 nucleotides SO0864 and SO0865 are separated by 213 nucleotides
SO0863: SO0863 - conserved hypothetical protein (NCBI ptt file), at 891,662 to 892,267
SO0863
SO0864: SO0864 - transcriptional regulator, LuxR family (NCBI ptt file), at 892,542 to 893,309
SO0864
SO0865: SO0865 - conserved hypothetical protein (NCBI ptt file), at 893,523 to 895,031
SO0865
Position (kb) 892
893
894 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 891.558 kb on + strand at 891.600 kb on + strand at 891.634 kb on + strand at 891.701 kb on + strand at 891.741 kb on - strand, within SO0863 at 891.749 kb on + strand, within SO0863 at 891.757 kb on - strand, within SO0863 at 891.872 kb on + strand, within SO0863 at 891.880 kb on - strand, within SO0863 at 891.880 kb on - strand, within SO0863 at 891.880 kb on - strand, within SO0863 at 891.916 kb on + strand, within SO0863 at 892.036 kb on - strand, within SO0863 at 892.126 kb on - strand, within SO0863 at 892.135 kb on + strand, within SO0863 at 892.144 kb on + strand, within SO0863 at 892.252 kb on + strand at 892.252 kb on + strand at 892.260 kb on - strand at 892.260 kb on - strand at 892.260 kb on - strand at 892.267 kb on - strand at 892.274 kb on + strand at 892.296 kb on + strand at 892.397 kb on + strand at 892.397 kb on + strand at 892.404 kb on - strand at 892.597 kb on + strand at 892.732 kb on + strand, within SO0864 at 892.802 kb on + strand, within SO0864 at 892.812 kb on + strand, within SO0864 at 892.812 kb on + strand, within SO0864 at 892.820 kb on - strand, within SO0864 at 892.846 kb on + strand, within SO0864 at 892.859 kb on + strand, within SO0864 at 892.859 kb on - strand, within SO0864 at 892.980 kb on - strand, within SO0864 at 893.113 kb on + strand, within SO0864 at 893.121 kb on - strand, within SO0864 at 893.121 kb on - strand, within SO0864 at 893.256 kb on + strand at 893.256 kb on + strand at 893.256 kb on + strand at 893.274 kb on - strand at 893.289 kb on - strand at 893.325 kb on + strand at 893.515 kb on + strand at 893.534 kb on - strand at 893.547 kb on + strand at 893.567 kb on - strand at 893.583 kb on + strand at 893.602 kb on - strand at 893.609 kb on - strand at 893.616 kb on + strand at 893.657 kb on - strand at 893.886 kb on + strand, within SO0865 at 893.918 kb on - strand, within SO0865 at 893.978 kb on - strand, within SO0865 at 894.048 kb on + strand, within SO0865 at 894.065 kb on + strand, within SO0865 at 894.147 kb on - strand, within SO0865 at 894.157 kb on + strand, within SO0865 at 894.183 kb on + strand, within SO0865 at 894.212 kb on - strand, within SO0865 at 894.223 kb on + strand, within SO0865 at 894.231 kb on - strand, within SO0865
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.2 mM remove 891,558 + +0.3 891,600 + +0.5 891,634 + +0.6 891,701 + +0.1 891,741 - SO0863 0.13 +0.1 891,749 + SO0863 0.14 +0.2 891,757 - SO0863 0.16 +0.2 891,872 + SO0863 0.35 -1.0 891,880 - SO0863 0.36 +0.4 891,880 - SO0863 0.36 +0.4 891,880 - SO0863 0.36 -0.9 891,916 + SO0863 0.42 -1.9 892,036 - SO0863 0.62 -0.3 892,126 - SO0863 0.77 -0.9 892,135 + SO0863 0.78 -0.1 892,144 + SO0863 0.80 -0.9 892,252 + +0.0 892,252 + +0.3 892,260 - -0.0 892,260 - -0.4 892,260 - -0.7 892,267 - -0.3 892,274 + +1.3 892,296 + -0.3 892,397 + +0.5 892,397 + -2.8 892,404 - +0.3 892,597 + +0.7 892,732 + SO0864 0.25 +1.6 892,802 + SO0864 0.34 +0.9 892,812 + SO0864 0.35 +0.2 892,812 + SO0864 0.35 +0.2 892,820 - SO0864 0.36 +0.6 892,846 + SO0864 0.40 +0.2 892,859 + SO0864 0.41 -0.4 892,859 - SO0864 0.41 +0.6 892,980 - SO0864 0.57 -0.1 893,113 + SO0864 0.74 +1.5 893,121 - SO0864 0.75 -0.0 893,121 - SO0864 0.75 +0.4 893,256 + -0.0 893,256 + -0.7 893,256 + +0.4 893,274 - -0.4 893,289 - +0.2 893,325 + -0.4 893,515 + -1.5 893,534 - +0.3 893,547 + +0.0 893,567 - +1.8 893,583 + -0.5 893,602 - -0.1 893,609 - +0.3 893,616 + +0.1 893,657 - -0.1 893,886 + SO0865 0.24 +0.2 893,918 - SO0865 0.26 +0.5 893,978 - SO0865 0.30 +0.1 894,048 + SO0865 0.35 -0.7 894,065 + SO0865 0.36 +0.5 894,147 - SO0865 0.41 -0.4 894,157 + SO0865 0.42 -0.4 894,183 + SO0865 0.44 +0.2 894,212 - SO0865 0.46 -0.3 894,223 + SO0865 0.46 -0.4 894,231 - SO0865 0.47 -0.4
Or see this region's nucleotide sequence