Experiment: LB 30C timecourse2 timepoint 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0759 and Psest_0760 are separated by 294 nucleotides Psest_0760 and Psest_0761 are separated by 25 nucleotides Psest_0761 and Psest_0762 overlap by 1 nucleotides
Psest_0759: Psest_0759 - Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)., at 828,732 to 829,478
_0759
Psest_0760: Psest_0760 - Polyketide cyclase / dehydrase and lipid transport., at 829,773 to 830,168
_0760
Psest_0761: Psest_0761 - Predicted permease, DMT superfamily, at 830,194 to 831,318
_0761
Psest_0762: Psest_0762 - Glucose/sorbosone dehydrogenases, at 831,318 to 832,616
_0762
Position (kb) 830
831
832 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 829.400 kb on + strand, within Psest_0759 at 829.600 kb on + strand at 829.601 kb on - strand at 829.601 kb on - strand at 829.601 kb on - strand at 829.725 kb on + strand at 829.725 kb on + strand at 829.725 kb on + strand at 829.725 kb on + strand at 829.725 kb on + strand at 829.725 kb on + strand at 829.725 kb on + strand at 829.725 kb on + strand at 829.725 kb on + strand at 829.725 kb on + strand at 829.725 kb on + strand at 829.726 kb on - strand at 829.726 kb on - strand at 829.726 kb on - strand at 829.726 kb on - strand at 829.726 kb on - strand at 829.791 kb on - strand at 829.827 kb on + strand, within Psest_0760 at 829.827 kb on + strand, within Psest_0760 at 829.827 kb on + strand, within Psest_0760 at 829.827 kb on + strand, within Psest_0760 at 829.828 kb on - strand, within Psest_0760 at 829.828 kb on - strand, within Psest_0760 at 829.828 kb on - strand, within Psest_0760 at 829.828 kb on - strand, within Psest_0760 at 829.828 kb on - strand, within Psest_0760 at 829.856 kb on - strand, within Psest_0760 at 830.088 kb on - strand, within Psest_0760 at 830.272 kb on + strand at 830.272 kb on + strand at 830.272 kb on + strand at 830.347 kb on - strand, within Psest_0761 at 830.353 kb on + strand, within Psest_0761 at 830.387 kb on + strand, within Psest_0761 at 830.387 kb on + strand, within Psest_0761 at 830.388 kb on - strand, within Psest_0761 at 830.388 kb on - strand, within Psest_0761 at 830.388 kb on - strand, within Psest_0761 at 830.388 kb on - strand, within Psest_0761 at 830.388 kb on - strand, within Psest_0761 at 830.388 kb on - strand, within Psest_0761 at 830.497 kb on + strand, within Psest_0761 at 830.497 kb on + strand, within Psest_0761 at 830.498 kb on - strand, within Psest_0761 at 830.498 kb on - strand, within Psest_0761 at 830.498 kb on - strand, within Psest_0761 at 830.498 kb on - strand, within Psest_0761 at 830.498 kb on - strand, within Psest_0761 at 830.522 kb on - strand, within Psest_0761 at 830.562 kb on - strand, within Psest_0761 at 830.577 kb on + strand, within Psest_0761 at 830.577 kb on + strand, within Psest_0761 at 830.577 kb on + strand, within Psest_0761 at 830.577 kb on + strand, within Psest_0761 at 830.654 kb on + strand, within Psest_0761 at 830.654 kb on + strand, within Psest_0761 at 830.654 kb on + strand, within Psest_0761 at 830.654 kb on + strand, within Psest_0761 at 830.654 kb on + strand, within Psest_0761 at 830.654 kb on + strand, within Psest_0761 at 830.654 kb on + strand, within Psest_0761 at 830.654 kb on + strand, within Psest_0761 at 830.654 kb on + strand, within Psest_0761 at 830.654 kb on + strand, within Psest_0761 at 830.655 kb on - strand, within Psest_0761 at 830.655 kb on - strand, within Psest_0761 at 830.655 kb on - strand, within Psest_0761 at 830.655 kb on - strand, within Psest_0761 at 830.655 kb on - strand, within Psest_0761 at 830.655 kb on - strand, within Psest_0761 at 830.655 kb on - strand, within Psest_0761 at 830.655 kb on - strand, within Psest_0761 at 830.655 kb on - strand, within Psest_0761 at 830.655 kb on - strand, within Psest_0761 at 830.753 kb on + strand, within Psest_0761 at 830.754 kb on - strand, within Psest_0761 at 830.754 kb on - strand, within Psest_0761 at 830.774 kb on + strand, within Psest_0761 at 830.775 kb on - strand, within Psest_0761 at 830.775 kb on - strand, within Psest_0761 at 830.775 kb on - strand, within Psest_0761 at 830.775 kb on - strand, within Psest_0761 at 830.775 kb on - strand, within Psest_0761 at 830.775 kb on - strand, within Psest_0761 at 830.825 kb on + strand, within Psest_0761 at 830.825 kb on + strand, within Psest_0761 at 831.034 kb on + strand, within Psest_0761 at 831.035 kb on - strand, within Psest_0761 at 831.035 kb on - strand, within Psest_0761 at 831.055 kb on + strand, within Psest_0761 at 831.055 kb on + strand, within Psest_0761 at 831.055 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.115 kb on + strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.116 kb on - strand, within Psest_0761 at 831.118 kb on + strand, within Psest_0761 at 831.118 kb on + strand, within Psest_0761 at 831.118 kb on + strand, within Psest_0761 at 831.118 kb on + strand, within Psest_0761 at 831.118 kb on + strand, within Psest_0761 at 831.118 kb on + strand, within Psest_0761 at 831.118 kb on + strand, within Psest_0761 at 831.118 kb on + strand, within Psest_0761 at 831.118 kb on + strand, within Psest_0761 at 831.118 kb on + strand, within Psest_0761 at 831.119 kb on - strand, within Psest_0761 at 831.119 kb on - strand, within Psest_0761 at 831.119 kb on - strand, within Psest_0761 at 831.119 kb on - strand, within Psest_0761 at 831.119 kb on - strand, within Psest_0761 at 831.119 kb on - strand, within Psest_0761 at 831.119 kb on - strand, within Psest_0761 at 831.119 kb on - strand, within Psest_0761 at 831.198 kb on + strand, within Psest_0761 at 831.508 kb on + strand, within Psest_0762 at 831.727 kb on + strand, within Psest_0762 at 831.727 kb on + strand, within Psest_0762 at 831.728 kb on - strand, within Psest_0762 at 831.728 kb on - strand, within Psest_0762 at 831.728 kb on - strand, within Psest_0762 at 831.744 kb on - strand, within Psest_0762 at 831.878 kb on - strand, within Psest_0762 at 831.976 kb on + strand, within Psest_0762 at 831.976 kb on + strand, within Psest_0762 at 831.976 kb on + strand, within Psest_0762 at 831.976 kb on + strand, within Psest_0762 at 831.976 kb on + strand, within Psest_0762 at 831.977 kb on - strand, within Psest_0762 at 831.977 kb on - strand, within Psest_0762 at 831.977 kb on - strand, within Psest_0762 at 831.977 kb on - strand, within Psest_0762 at 831.977 kb on - strand, within Psest_0762 at 831.982 kb on + strand, within Psest_0762 at 832.001 kb on + strand, within Psest_0762 at 832.002 kb on - strand, within Psest_0762 at 832.129 kb on + strand, within Psest_0762 at 832.129 kb on + strand, within Psest_0762 at 832.129 kb on + strand, within Psest_0762 at 832.129 kb on + strand, within Psest_0762 at 832.129 kb on + strand, within Psest_0762 at 832.129 kb on + strand, within Psest_0762 at 832.129 kb on + strand, within Psest_0762 at 832.130 kb on - strand, within Psest_0762 at 832.160 kb on - strand, within Psest_0762 at 832.201 kb on + strand, within Psest_0762 at 832.201 kb on + strand, within Psest_0762 at 832.202 kb on - strand, within Psest_0762 at 832.202 kb on - strand, within Psest_0762
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse2 timepoint 2 remove 829,400 + Psest_0759 0.89 +1.6 829,600 + -0.4 829,601 - -1.2 829,601 - -0.4 829,601 - -0.4 829,725 + -0.7 829,725 + -1.4 829,725 + -0.5 829,725 + +0.9 829,725 + +0.5 829,725 + -0.9 829,725 + -0.1 829,725 + +1.5 829,725 + +3.4 829,725 + +0.3 829,725 + +0.5 829,726 - -0.6 829,726 - +0.8 829,726 - -3.4 829,726 - +1.4 829,726 - +0.1 829,791 - -0.4 829,827 + Psest_0760 0.14 +0.3 829,827 + Psest_0760 0.14 -0.2 829,827 + Psest_0760 0.14 -1.0 829,827 + Psest_0760 0.14 +0.9 829,828 - Psest_0760 0.14 +0.1 829,828 - Psest_0760 0.14 +2.4 829,828 - Psest_0760 0.14 -0.4 829,828 - Psest_0760 0.14 +0.6 829,828 - Psest_0760 0.14 +0.1 829,856 - Psest_0760 0.21 +0.5 830,088 - Psest_0760 0.80 +2.0 830,272 + +0.2 830,272 + -1.1 830,272 + -0.1 830,347 - Psest_0761 0.14 -2.4 830,353 + Psest_0761 0.14 +0.5 830,387 + Psest_0761 0.17 +2.4 830,387 + Psest_0761 0.17 -0.6 830,388 - Psest_0761 0.17 -0.1 830,388 - Psest_0761 0.17 +0.2 830,388 - Psest_0761 0.17 +1.0 830,388 - Psest_0761 0.17 -2.8 830,388 - Psest_0761 0.17 +0.1 830,388 - Psest_0761 0.17 +0.7 830,497 + Psest_0761 0.27 +0.6 830,497 + Psest_0761 0.27 -2.2 830,498 - Psest_0761 0.27 +0.9 830,498 - Psest_0761 0.27 -2.1 830,498 - Psest_0761 0.27 -2.2 830,498 - Psest_0761 0.27 -0.1 830,498 - Psest_0761 0.27 +1.4 830,522 - Psest_0761 0.29 -0.3 830,562 - Psest_0761 0.33 -0.3 830,577 + Psest_0761 0.34 +1.9 830,577 + Psest_0761 0.34 -0.6 830,577 + Psest_0761 0.34 +0.5 830,577 + Psest_0761 0.34 -0.2 830,654 + Psest_0761 0.41 +0.6 830,654 + Psest_0761 0.41 -1.0 830,654 + Psest_0761 0.41 +0.4 830,654 + Psest_0761 0.41 -1.4 830,654 + Psest_0761 0.41 -0.6 830,654 + Psest_0761 0.41 +0.4 830,654 + Psest_0761 0.41 +0.7 830,654 + Psest_0761 0.41 -1.5 830,654 + Psest_0761 0.41 +1.0 830,654 + Psest_0761 0.41 -0.5 830,655 - Psest_0761 0.41 +1.0 830,655 - Psest_0761 0.41 +0.3 830,655 - Psest_0761 0.41 -1.7 830,655 - Psest_0761 0.41 +0.9 830,655 - Psest_0761 0.41 +0.1 830,655 - Psest_0761 0.41 -0.1 830,655 - Psest_0761 0.41 -2.5 830,655 - Psest_0761 0.41 +1.1 830,655 - Psest_0761 0.41 +1.4 830,655 - Psest_0761 0.41 +0.2 830,753 + Psest_0761 0.50 +1.2 830,754 - Psest_0761 0.50 -0.7 830,754 - Psest_0761 0.50 +0.6 830,774 + Psest_0761 0.52 +0.9 830,775 - Psest_0761 0.52 +0.3 830,775 - Psest_0761 0.52 -0.3 830,775 - Psest_0761 0.52 -1.4 830,775 - Psest_0761 0.52 +1.2 830,775 - Psest_0761 0.52 +0.2 830,775 - Psest_0761 0.52 +0.6 830,825 + Psest_0761 0.56 +1.7 830,825 + Psest_0761 0.56 -1.8 831,034 + Psest_0761 0.75 -0.2 831,035 - Psest_0761 0.75 -0.1 831,035 - Psest_0761 0.75 -2.2 831,055 + Psest_0761 0.77 +0.9 831,055 + Psest_0761 0.77 +1.0 831,055 + Psest_0761 0.77 -0.6 831,115 + Psest_0761 0.82 -0.5 831,115 + Psest_0761 0.82 +1.3 831,115 + Psest_0761 0.82 -0.7 831,115 + Psest_0761 0.82 -1.8 831,115 + Psest_0761 0.82 +1.4 831,115 + Psest_0761 0.82 -2.1 831,115 + Psest_0761 0.82 +0.9 831,115 + Psest_0761 0.82 +1.0 831,115 + Psest_0761 0.82 +0.3 831,115 + Psest_0761 0.82 +1.2 831,115 + Psest_0761 0.82 -1.4 831,115 + Psest_0761 0.82 +0.1 831,115 + Psest_0761 0.82 -1.6 831,116 - Psest_0761 0.82 -0.8 831,116 - Psest_0761 0.82 -1.8 831,116 - Psest_0761 0.82 +1.3 831,116 - Psest_0761 0.82 +0.2 831,116 - Psest_0761 0.82 +0.2 831,116 - Psest_0761 0.82 +1.5 831,116 - Psest_0761 0.82 +0.6 831,116 - Psest_0761 0.82 +2.9 831,116 - Psest_0761 0.82 -0.9 831,116 - Psest_0761 0.82 +0.6 831,116 - Psest_0761 0.82 +1.2 831,116 - Psest_0761 0.82 -1.5 831,116 - Psest_0761 0.82 -2.3 831,116 - Psest_0761 0.82 -0.9 831,118 + Psest_0761 0.82 +0.2 831,118 + Psest_0761 0.82 -1.3 831,118 + Psest_0761 0.82 -1.4 831,118 + Psest_0761 0.82 -0.9 831,118 + Psest_0761 0.82 -1.5 831,118 + Psest_0761 0.82 +1.9 831,118 + Psest_0761 0.82 -1.7 831,118 + Psest_0761 0.82 -0.1 831,118 + Psest_0761 0.82 +0.1 831,118 + Psest_0761 0.82 +0.4 831,119 - Psest_0761 0.82 +0.6 831,119 - Psest_0761 0.82 +0.1 831,119 - Psest_0761 0.82 +0.1 831,119 - Psest_0761 0.82 -0.7 831,119 - Psest_0761 0.82 -2.4 831,119 - Psest_0761 0.82 +0.7 831,119 - Psest_0761 0.82 +0.6 831,119 - Psest_0761 0.82 +1.5 831,198 + Psest_0761 0.89 -2.2 831,508 + Psest_0762 0.15 -2.0 831,727 + Psest_0762 0.31 +0.2 831,727 + Psest_0762 0.31 +0.9 831,728 - Psest_0762 0.32 +0.7 831,728 - Psest_0762 0.32 -0.4 831,728 - Psest_0762 0.32 +1.5 831,744 - Psest_0762 0.33 -1.5 831,878 - Psest_0762 0.43 -0.5 831,976 + Psest_0762 0.51 +1.2 831,976 + Psest_0762 0.51 +0.1 831,976 + Psest_0762 0.51 +2.0 831,976 + Psest_0762 0.51 +0.6 831,976 + Psest_0762 0.51 +0.1 831,977 - Psest_0762 0.51 -1.2 831,977 - Psest_0762 0.51 -0.7 831,977 - Psest_0762 0.51 +1.8 831,977 - Psest_0762 0.51 +0.6 831,977 - Psest_0762 0.51 -0.3 831,982 + Psest_0762 0.51 +0.6 832,001 + Psest_0762 0.53 -0.5 832,002 - Psest_0762 0.53 +0.5 832,129 + Psest_0762 0.62 +3.8 832,129 + Psest_0762 0.62 +0.4 832,129 + Psest_0762 0.62 +1.2 832,129 + Psest_0762 0.62 +0.4 832,129 + Psest_0762 0.62 +0.9 832,129 + Psest_0762 0.62 -1.3 832,129 + Psest_0762 0.62 -0.0 832,130 - Psest_0762 0.63 +0.2 832,160 - Psest_0762 0.65 -1.9 832,201 + Psest_0762 0.68 +1.2 832,201 + Psest_0762 0.68 -1.2 832,202 - Psest_0762 0.68 +0.1 832,202 - Psest_0762 0.68 -1.7
Or see this region's nucleotide sequence