Experiment: LB 30C timecourse2 timepoint 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0636 and Psest_0637 are separated by 83 nucleotides Psest_0637 and Psest_0638 are separated by 10 nucleotides Psest_0638 and Psest_0639 are separated by 76 nucleotides Psest_0639 and Psest_0640 are separated by 116 nucleotides
Psest_0636: Psest_0636 - Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein, at 691,640 to 692,455
_0636
Psest_0637: Psest_0637 - Short-chain dehydrogenases of various substrate specificities, at 692,539 to 693,369
_0637
Psest_0638: Psest_0638 - Predicted lactoylglutathione lyase, at 693,380 to 693,808
_0638
Psest_0639: Psest_0639 - Uncharacterised protein family (UPF0259)., at 693,885 to 694,565
_0639
Psest_0640: Psest_0640 - Uncharacterized conserved protein, at 694,682 to 695,158
_0640
Position (kb) 693
694 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 692.483 kb on + strand at 692.485 kb on + strand at 692.493 kb on + strand at 692.493 kb on + strand at 692.493 kb on + strand at 692.493 kb on + strand at 692.493 kb on + strand at 692.493 kb on + strand at 692.493 kb on + strand at 692.493 kb on + strand at 692.493 kb on + strand at 692.493 kb on + strand at 692.493 kb on + strand at 692.493 kb on + strand at 692.493 kb on + strand at 692.493 kb on + strand at 692.493 kb on + strand at 692.493 kb on + strand at 692.493 kb on + strand at 692.493 kb on + strand at 692.493 kb on + strand at 692.493 kb on + strand at 692.493 kb on + strand at 692.494 kb on - strand at 692.494 kb on - strand at 692.494 kb on - strand at 692.494 kb on - strand at 692.494 kb on - strand at 692.494 kb on - strand at 692.552 kb on + strand at 692.552 kb on + strand at 692.552 kb on + strand at 692.553 kb on - strand at 692.553 kb on - strand at 692.553 kb on - strand at 692.567 kb on + strand at 692.568 kb on - strand at 692.909 kb on - strand at 692.995 kb on + strand, within Psest_0637 at 692.996 kb on - strand, within Psest_0637 at 692.996 kb on - strand, within Psest_0637 at 692.996 kb on - strand, within Psest_0637 at 692.996 kb on - strand, within Psest_0637 at 693.022 kb on + strand, within Psest_0637 at 693.092 kb on + strand, within Psest_0637 at 693.092 kb on + strand, within Psest_0637 at 693.093 kb on - strand, within Psest_0637 at 693.119 kb on - strand, within Psest_0637 at 693.121 kb on - strand, within Psest_0637 at 693.232 kb on + strand, within Psest_0637 at 693.232 kb on + strand, within Psest_0637 at 693.232 kb on + strand, within Psest_0637 at 693.233 kb on - strand, within Psest_0637 at 693.233 kb on - strand, within Psest_0637 at 693.233 kb on - strand, within Psest_0637 at 693.233 kb on - strand, within Psest_0637 at 693.233 kb on - strand, within Psest_0637 at 693.233 kb on - strand, within Psest_0637 at 693.233 kb on - strand, within Psest_0637 at 693.391 kb on + strand at 693.418 kb on + strand at 693.474 kb on + strand, within Psest_0638 at 693.474 kb on + strand, within Psest_0638 at 693.474 kb on + strand, within Psest_0638 at 693.474 kb on + strand, within Psest_0638 at 693.474 kb on + strand, within Psest_0638 at 693.474 kb on + strand, within Psest_0638 at 693.475 kb on - strand, within Psest_0638 at 693.475 kb on - strand, within Psest_0638 at 693.475 kb on - strand, within Psest_0638 at 693.475 kb on - strand, within Psest_0638 at 693.477 kb on + strand, within Psest_0638 at 693.477 kb on + strand, within Psest_0638 at 693.478 kb on - strand, within Psest_0638 at 693.732 kb on + strand, within Psest_0638 at 693.732 kb on + strand, within Psest_0638 at 693.732 kb on + strand, within Psest_0638 at 693.732 kb on + strand, within Psest_0638 at 693.733 kb on - strand, within Psest_0638 at 693.733 kb on - strand, within Psest_0638 at 693.733 kb on - strand, within Psest_0638 at 693.733 kb on - strand, within Psest_0638 at 693.733 kb on - strand, within Psest_0638 at 693.841 kb on + strand at 693.841 kb on + strand at 694.095 kb on + strand, within Psest_0639 at 694.096 kb on - strand, within Psest_0639 at 694.177 kb on + strand, within Psest_0639 at 694.178 kb on - strand, within Psest_0639 at 694.309 kb on + strand, within Psest_0639 at 694.309 kb on + strand, within Psest_0639 at 694.310 kb on - strand, within Psest_0639 at 694.378 kb on + strand, within Psest_0639 at 694.378 kb on + strand, within Psest_0639 at 694.378 kb on + strand, within Psest_0639 at 694.379 kb on - strand, within Psest_0639 at 694.379 kb on - strand, within Psest_0639 at 694.379 kb on - strand, within Psest_0639 at 694.379 kb on - strand, within Psest_0639 at 694.379 kb on - strand, within Psest_0639 at 694.401 kb on + strand, within Psest_0639 at 694.401 kb on + strand, within Psest_0639 at 694.401 kb on + strand, within Psest_0639 at 694.525 kb on + strand at 694.525 kb on + strand at 694.721 kb on + strand at 694.721 kb on + strand at 694.721 kb on + strand at 694.721 kb on + strand at 694.721 kb on + strand at 694.722 kb on - strand at 694.722 kb on - strand at 694.724 kb on + strand at 694.724 kb on + strand at 694.724 kb on + strand at 694.724 kb on + strand at 694.725 kb on - strand at 694.725 kb on - strand at 694.725 kb on - strand at 694.760 kb on + strand, within Psest_0640 at 694.760 kb on + strand, within Psest_0640 at 694.760 kb on + strand, within Psest_0640
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse2 timepoint 2 remove 692,483 + +2.6 692,485 + -1.1 692,493 + +0.6 692,493 + +0.3 692,493 + -0.4 692,493 + +0.6 692,493 + +0.6 692,493 + -1.4 692,493 + -0.1 692,493 + -1.4 692,493 + -0.4 692,493 + +0.6 692,493 + -0.6 692,493 + +2.1 692,493 + +1.4 692,493 + -1.1 692,493 + -0.9 692,493 + +0.8 692,493 + -2.0 692,493 + +2.2 692,493 + -0.6 692,493 + +1.0 692,493 + +2.1 692,494 - -0.9 692,494 - -1.5 692,494 - +1.2 692,494 - +1.6 692,494 - -2.9 692,494 - -0.0 692,552 + +1.6 692,552 + -2.1 692,552 + -0.7 692,553 - -0.4 692,553 - -0.7 692,553 - -0.4 692,567 + -0.4 692,568 - -0.6 692,909 - +0.6 692,995 + Psest_0637 0.55 -2.1 692,996 - Psest_0637 0.55 +1.1 692,996 - Psest_0637 0.55 +0.6 692,996 - Psest_0637 0.55 +0.6 692,996 - Psest_0637 0.55 -0.8 693,022 + Psest_0637 0.58 -1.8 693,092 + Psest_0637 0.67 -2.3 693,092 + Psest_0637 0.67 +2.0 693,093 - Psest_0637 0.67 +1.6 693,119 - Psest_0637 0.70 +0.4 693,121 - Psest_0637 0.70 -0.9 693,232 + Psest_0637 0.83 +1.6 693,232 + Psest_0637 0.83 +1.1 693,232 + Psest_0637 0.83 +1.2 693,233 - Psest_0637 0.84 +1.6 693,233 - Psest_0637 0.84 -1.2 693,233 - Psest_0637 0.84 +1.2 693,233 - Psest_0637 0.84 -0.2 693,233 - Psest_0637 0.84 +0.2 693,233 - Psest_0637 0.84 +2.2 693,233 - Psest_0637 0.84 +4.1 693,391 + +0.2 693,418 + +0.6 693,474 + Psest_0638 0.22 +2.0 693,474 + Psest_0638 0.22 +0.7 693,474 + Psest_0638 0.22 -0.6 693,474 + Psest_0638 0.22 -0.9 693,474 + Psest_0638 0.22 +1.6 693,474 + Psest_0638 0.22 -1.5 693,475 - Psest_0638 0.22 +1.0 693,475 - Psest_0638 0.22 +0.4 693,475 - Psest_0638 0.22 -0.4 693,475 - Psest_0638 0.22 -0.2 693,477 + Psest_0638 0.23 -0.2 693,477 + Psest_0638 0.23 +2.1 693,478 - Psest_0638 0.23 -0.1 693,732 + Psest_0638 0.82 -3.3 693,732 + Psest_0638 0.82 -1.5 693,732 + Psest_0638 0.82 -2.5 693,732 + Psest_0638 0.82 +0.5 693,733 - Psest_0638 0.82 -1.7 693,733 - Psest_0638 0.82 +0.6 693,733 - Psest_0638 0.82 -1.3 693,733 - Psest_0638 0.82 -0.9 693,733 - Psest_0638 0.82 +1.2 693,841 + -1.4 693,841 + -0.7 694,095 + Psest_0639 0.31 -1.4 694,096 - Psest_0639 0.31 -0.7 694,177 + Psest_0639 0.43 +0.1 694,178 - Psest_0639 0.43 -0.4 694,309 + Psest_0639 0.62 +1.1 694,309 + Psest_0639 0.62 -0.0 694,310 - Psest_0639 0.62 -0.7 694,378 + Psest_0639 0.72 +2.6 694,378 + Psest_0639 0.72 -1.7 694,378 + Psest_0639 0.72 -0.4 694,379 - Psest_0639 0.73 +0.4 694,379 - Psest_0639 0.73 +1.8 694,379 - Psest_0639 0.73 +0.1 694,379 - Psest_0639 0.73 +1.0 694,379 - Psest_0639 0.73 +0.1 694,401 + Psest_0639 0.76 +1.6 694,401 + Psest_0639 0.76 +0.5 694,401 + Psest_0639 0.76 +1.0 694,525 + +0.9 694,525 + -0.1 694,721 + +0.2 694,721 + -1.7 694,721 + -0.4 694,721 + +0.8 694,721 + -1.4 694,722 - -0.4 694,722 - +2.4 694,724 + +1.1 694,724 + +0.1 694,724 + +0.1 694,724 + -0.7 694,725 - +0.1 694,725 - +1.9 694,725 - +2.4 694,760 + Psest_0640 0.16 +1.1 694,760 + Psest_0640 0.16 -1.5 694,760 + Psest_0640 0.16 +0.6
Or see this region's nucleotide sequence