Experiment: LB 30C timecourse2 timepoint 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0562 and Psest_0563 are separated by 105 nucleotides Psest_0563 and Psest_0564 are separated by 166 nucleotides
Psest_0562: Psest_0562 - magnesium-translocating P-type ATPase, at 615,249 to 618,797
_0562
Psest_0563: Psest_0563 - urea ABC transporter, ATP-binding protein UrtE, at 618,903 to 619,601
_0563
Psest_0564: Psest_0564 - urea ABC transporter, ATP-binding protein UrtD, at 619,768 to 620,619
_0564
Position (kb) 618
619
620 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 618.364 kb on + strand, within Psest_0562 at 618.365 kb on - strand, within Psest_0562 at 618.365 kb on - strand, within Psest_0562 at 618.376 kb on + strand, within Psest_0562 at 618.377 kb on - strand, within Psest_0562 at 618.567 kb on + strand at 618.575 kb on - strand at 618.595 kb on + strand at 618.595 kb on + strand at 618.595 kb on + strand at 618.595 kb on + strand at 618.595 kb on + strand at 618.595 kb on + strand at 618.595 kb on + strand at 618.595 kb on + strand at 618.595 kb on + strand at 618.595 kb on + strand at 618.595 kb on + strand at 618.596 kb on - strand at 618.596 kb on - strand at 618.596 kb on - strand at 618.596 kb on - strand at 618.596 kb on - strand at 618.596 kb on - strand at 618.596 kb on - strand at 618.596 kb on - strand at 618.596 kb on - strand at 618.596 kb on - strand at 618.596 kb on - strand at 618.786 kb on + strand at 618.786 kb on + strand at 618.786 kb on + strand at 618.786 kb on + strand at 618.787 kb on - strand at 618.904 kb on + strand at 618.904 kb on + strand at 618.905 kb on - strand at 618.905 kb on - strand at 618.905 kb on - strand at 618.905 kb on - strand at 618.905 kb on - strand at 618.924 kb on + strand at 618.924 kb on + strand at 618.924 kb on + strand at 618.924 kb on + strand at 618.924 kb on + strand at 618.924 kb on + strand at 618.924 kb on + strand at 618.924 kb on + strand at 618.925 kb on - strand at 618.991 kb on + strand, within Psest_0563 at 619.021 kb on + strand, within Psest_0563 at 619.021 kb on + strand, within Psest_0563 at 619.022 kb on - strand, within Psest_0563 at 619.252 kb on + strand, within Psest_0563 at 619.252 kb on + strand, within Psest_0563 at 619.252 kb on + strand, within Psest_0563 at 619.252 kb on + strand, within Psest_0563 at 619.253 kb on - strand, within Psest_0563 at 619.364 kb on - strand, within Psest_0563 at 619.364 kb on - strand, within Psest_0563 at 619.573 kb on + strand at 619.573 kb on + strand at 619.574 kb on - strand at 619.639 kb on + strand at 619.639 kb on + strand at 619.643 kb on + strand at 619.643 kb on + strand at 619.643 kb on + strand at 619.643 kb on + strand at 619.644 kb on - strand at 619.654 kb on + strand at 619.655 kb on - strand at 619.693 kb on + strand at 619.693 kb on + strand at 619.781 kb on + strand at 619.781 kb on + strand at 619.781 kb on + strand at 619.781 kb on + strand at 619.781 kb on + strand at 619.782 kb on - strand at 619.782 kb on - strand at 619.782 kb on - strand at 619.782 kb on - strand at 619.782 kb on - strand at 619.782 kb on - strand at 620.429 kb on + strand, within Psest_0564 at 620.430 kb on - strand, within Psest_0564
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse2 timepoint 2 remove 618,364 + Psest_0562 0.88 +0.7 618,365 - Psest_0562 0.88 +0.7 618,365 - Psest_0562 0.88 +0.9 618,376 + Psest_0562 0.88 -0.7 618,377 - Psest_0562 0.88 +2.7 618,567 + +0.4 618,575 - -0.8 618,595 + -2.1 618,595 + +2.1 618,595 + +1.7 618,595 + -0.7 618,595 + -0.1 618,595 + +0.7 618,595 + -1.7 618,595 + +1.0 618,595 + +0.7 618,595 + -0.7 618,595 + +2.8 618,596 - +0.1 618,596 - +3.3 618,596 - +0.4 618,596 - +0.7 618,596 - +0.1 618,596 - -0.1 618,596 - +3.5 618,596 - +0.1 618,596 - +0.9 618,596 - +0.7 618,596 - +0.1 618,786 + -0.7 618,786 + -0.1 618,786 + +2.7 618,786 + -0.9 618,787 - -0.7 618,904 + -1.1 618,904 + +0.3 618,905 - -0.4 618,905 - -2.5 618,905 - +1.3 618,905 - -1.7 618,905 - -0.3 618,924 + -2.0 618,924 + +2.1 618,924 + -0.1 618,924 + -1.1 618,924 + +1.7 618,924 + +2.7 618,924 + -1.1 618,924 + +3.3 618,925 - +0.1 618,991 + Psest_0563 0.13 +1.7 619,021 + Psest_0563 0.17 -1.3 619,021 + Psest_0563 0.17 -2.8 619,022 - Psest_0563 0.17 -0.9 619,252 + Psest_0563 0.50 +1.7 619,252 + Psest_0563 0.50 +0.1 619,252 + Psest_0563 0.50 +0.7 619,252 + Psest_0563 0.50 +1.7 619,253 - Psest_0563 0.50 +1.0 619,364 - Psest_0563 0.66 +2.3 619,364 - Psest_0563 0.66 -0.9 619,573 + -0.7 619,573 + -1.3 619,574 - +0.1 619,639 + +1.1 619,639 + -0.8 619,643 + +0.3 619,643 + +0.8 619,643 + +0.6 619,643 + -1.8 619,644 - +0.3 619,654 + +1.7 619,655 - +0.7 619,693 + +2.5 619,693 + -0.3 619,781 + -2.4 619,781 + +0.7 619,781 + +0.9 619,781 + +0.1 619,781 + +0.5 619,782 - -2.5 619,782 - +4.0 619,782 - +0.1 619,782 - +0.5 619,782 - -3.2 619,782 - +0.1 620,429 + Psest_0564 0.78 +2.4 620,430 - Psest_0564 0.78 +0.1
Or see this region's nucleotide sequence