Experiment: LB 30C timecourse2 timepoint 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0552 and Psest_0553 are separated by 304 nucleotides Psest_0553 and Psest_0554 are separated by 0 nucleotides Psest_0554 and Psest_0555 are separated by 69 nucleotides
Psest_0552: Psest_0552 - conserved hypothetical protein, proteobacterial, at 605,652 to 606,371
_0552
Psest_0553: Psest_0553 - DnaK suppressor protein, at 606,676 to 606,942
_0553
Psest_0554: Psest_0554 - Signal transduction histidine kinase, at 606,943 to 608,124
_0554
Psest_0555: Psest_0555 - Cytosine/uracil/thiamine/allantoin permeases, at 608,194 to 609,666
_0555
Position (kb) 606
607
608
609 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 606.001 kb on + strand, within Psest_0552 at 606.001 kb on + strand, within Psest_0552 at 606.001 kb on + strand, within Psest_0552 at 606.001 kb on + strand, within Psest_0552 at 606.001 kb on + strand, within Psest_0552 at 606.001 kb on + strand, within Psest_0552 at 606.001 kb on + strand, within Psest_0552 at 606.002 kb on - strand, within Psest_0552 at 606.002 kb on - strand, within Psest_0552 at 606.002 kb on - strand, within Psest_0552 at 606.002 kb on - strand, within Psest_0552 at 606.004 kb on + strand, within Psest_0552 at 606.005 kb on - strand, within Psest_0552 at 606.005 kb on - strand, within Psest_0552 at 606.005 kb on - strand, within Psest_0552 at 606.065 kb on - strand, within Psest_0552 at 606.106 kb on + strand, within Psest_0552 at 606.106 kb on + strand, within Psest_0552 at 606.106 kb on + strand, within Psest_0552 at 606.106 kb on + strand, within Psest_0552 at 606.107 kb on - strand, within Psest_0552 at 606.107 kb on - strand, within Psest_0552 at 606.107 kb on - strand, within Psest_0552 at 606.169 kb on + strand, within Psest_0552 at 606.169 kb on + strand, within Psest_0552 at 606.169 kb on + strand, within Psest_0552 at 606.169 kb on + strand, within Psest_0552 at 606.169 kb on + strand, within Psest_0552 at 606.169 kb on + strand, within Psest_0552 at 606.169 kb on + strand, within Psest_0552 at 606.170 kb on - strand, within Psest_0552 at 606.170 kb on - strand, within Psest_0552 at 606.170 kb on - strand, within Psest_0552 at 606.170 kb on - strand, within Psest_0552 at 606.170 kb on - strand, within Psest_0552 at 606.170 kb on - strand, within Psest_0552 at 606.170 kb on - strand, within Psest_0552 at 606.170 kb on - strand, within Psest_0552 at 606.170 kb on - strand, within Psest_0552 at 606.231 kb on + strand, within Psest_0552 at 606.358 kb on + strand at 606.358 kb on + strand at 606.358 kb on + strand at 606.358 kb on + strand at 606.358 kb on + strand at 606.358 kb on + strand at 606.359 kb on - strand at 606.359 kb on - strand at 606.359 kb on - strand at 606.359 kb on - strand at 606.371 kb on + strand at 606.372 kb on - strand at 606.372 kb on - strand at 606.372 kb on - strand at 606.459 kb on + strand at 606.459 kb on + strand at 606.459 kb on + strand at 606.460 kb on - strand at 606.460 kb on - strand at 606.489 kb on - strand at 606.537 kb on - strand at 606.537 kb on - strand at 606.905 kb on - strand, within Psest_0553 at 607.011 kb on + strand at 607.097 kb on + strand, within Psest_0554 at 607.360 kb on + strand, within Psest_0554 at 607.360 kb on + strand, within Psest_0554 at 607.360 kb on + strand, within Psest_0554 at 607.361 kb on - strand, within Psest_0554 at 607.403 kb on - strand, within Psest_0554 at 607.809 kb on + strand, within Psest_0554 at 607.809 kb on + strand, within Psest_0554 at 607.809 kb on + strand, within Psest_0554 at 607.809 kb on + strand, within Psest_0554 at 607.809 kb on + strand, within Psest_0554 at 607.809 kb on + strand, within Psest_0554 at 607.809 kb on + strand, within Psest_0554 at 607.809 kb on + strand, within Psest_0554 at 607.810 kb on - strand, within Psest_0554 at 607.810 kb on - strand, within Psest_0554 at 607.810 kb on - strand, within Psest_0554 at 607.810 kb on - strand, within Psest_0554 at 607.811 kb on + strand, within Psest_0554 at 607.811 kb on + strand, within Psest_0554 at 607.811 kb on + strand, within Psest_0554 at 607.811 kb on + strand, within Psest_0554 at 607.811 kb on + strand, within Psest_0554 at 607.811 kb on + strand, within Psest_0554 at 607.811 kb on + strand, within Psest_0554 at 607.811 kb on + strand, within Psest_0554 at 607.811 kb on + strand, within Psest_0554 at 607.811 kb on + strand, within Psest_0554 at 607.811 kb on + strand, within Psest_0554 at 607.811 kb on + strand, within Psest_0554 at 607.811 kb on + strand, within Psest_0554 at 607.811 kb on + strand, within Psest_0554 at 607.811 kb on + strand, within Psest_0554 at 607.811 kb on + strand, within Psest_0554 at 607.812 kb on - strand, within Psest_0554 at 607.812 kb on - strand, within Psest_0554 at 607.812 kb on - strand, within Psest_0554 at 607.812 kb on - strand, within Psest_0554 at 607.812 kb on - strand, within Psest_0554 at 607.812 kb on - strand, within Psest_0554 at 607.812 kb on - strand, within Psest_0554 at 607.826 kb on + strand, within Psest_0554 at 607.826 kb on + strand, within Psest_0554 at 607.827 kb on - strand, within Psest_0554 at 607.827 kb on - strand, within Psest_0554 at 607.827 kb on - strand, within Psest_0554 at 608.163 kb on + strand at 608.163 kb on + strand at 608.163 kb on + strand at 608.164 kb on - strand at 608.255 kb on + strand at 608.255 kb on + strand at 608.405 kb on + strand, within Psest_0555 at 608.405 kb on + strand, within Psest_0555 at 608.405 kb on + strand, within Psest_0555 at 608.405 kb on + strand, within Psest_0555 at 608.405 kb on + strand, within Psest_0555 at 608.405 kb on + strand, within Psest_0555 at 608.406 kb on - strand, within Psest_0555 at 608.406 kb on - strand, within Psest_0555 at 608.406 kb on - strand, within Psest_0555 at 608.468 kb on + strand, within Psest_0555 at 608.468 kb on + strand, within Psest_0555 at 608.468 kb on + strand, within Psest_0555 at 608.469 kb on - strand, within Psest_0555 at 608.471 kb on + strand, within Psest_0555 at 608.472 kb on - strand, within Psest_0555 at 608.472 kb on - strand, within Psest_0555 at 608.654 kb on + strand, within Psest_0555 at 608.654 kb on + strand, within Psest_0555 at 608.654 kb on + strand, within Psest_0555 at 608.655 kb on - strand, within Psest_0555 at 608.655 kb on - strand, within Psest_0555 at 608.919 kb on - strand, within Psest_0555 at 608.942 kb on + strand, within Psest_0555 at 608.942 kb on + strand, within Psest_0555 at 608.942 kb on + strand, within Psest_0555 at 608.943 kb on - strand, within Psest_0555 at 608.943 kb on - strand, within Psest_0555 at 608.943 kb on - strand, within Psest_0555 at 609.092 kb on + strand, within Psest_0555 at 609.092 kb on + strand, within Psest_0555 at 609.092 kb on + strand, within Psest_0555 at 609.093 kb on - strand, within Psest_0555
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse2 timepoint 2 remove 606,001 + Psest_0552 0.48 +0.4 606,001 + Psest_0552 0.48 -0.7 606,001 + Psest_0552 0.48 +1.1 606,001 + Psest_0552 0.48 -0.1 606,001 + Psest_0552 0.48 +0.4 606,001 + Psest_0552 0.48 +0.7 606,001 + Psest_0552 0.48 +0.1 606,002 - Psest_0552 0.49 +1.0 606,002 - Psest_0552 0.49 -0.7 606,002 - Psest_0552 0.49 +1.3 606,002 - Psest_0552 0.49 +0.7 606,004 + Psest_0552 0.49 -0.3 606,005 - Psest_0552 0.49 -1.8 606,005 - Psest_0552 0.49 +1.3 606,005 - Psest_0552 0.49 +1.4 606,065 - Psest_0552 0.57 -0.3 606,106 + Psest_0552 0.63 +0.4 606,106 + Psest_0552 0.63 -0.6 606,106 + Psest_0552 0.63 +0.4 606,106 + Psest_0552 0.63 -0.3 606,107 - Psest_0552 0.63 +0.7 606,107 - Psest_0552 0.63 -0.1 606,107 - Psest_0552 0.63 +0.8 606,169 + Psest_0552 0.72 -0.5 606,169 + Psest_0552 0.72 +0.4 606,169 + Psest_0552 0.72 +1.2 606,169 + Psest_0552 0.72 +1.2 606,169 + Psest_0552 0.72 +0.1 606,169 + Psest_0552 0.72 +2.7 606,169 + Psest_0552 0.72 -1.8 606,170 - Psest_0552 0.72 -1.1 606,170 - Psest_0552 0.72 +0.7 606,170 - Psest_0552 0.72 +0.9 606,170 - Psest_0552 0.72 +1.0 606,170 - Psest_0552 0.72 +0.3 606,170 - Psest_0552 0.72 -0.6 606,170 - Psest_0552 0.72 -2.4 606,170 - Psest_0552 0.72 +0.2 606,170 - Psest_0552 0.72 -0.6 606,231 + Psest_0552 0.80 +0.1 606,358 + +1.8 606,358 + +1.1 606,358 + -0.8 606,358 + +0.7 606,358 + +0.3 606,358 + +1.7 606,359 - +1.4 606,359 - -1.7 606,359 - -1.8 606,359 - +0.5 606,371 + -0.2 606,372 - -0.7 606,372 - -0.7 606,372 - -0.9 606,459 + -1.0 606,459 + -1.5 606,459 + +0.3 606,460 - -1.4 606,460 - -0.3 606,489 - -1.1 606,537 - -1.1 606,537 - -0.7 606,905 - Psest_0553 0.86 +0.5 607,011 + -0.3 607,097 + Psest_0554 0.13 -0.2 607,360 + Psest_0554 0.35 -1.1 607,360 + Psest_0554 0.35 -0.3 607,360 + Psest_0554 0.35 -2.4 607,361 - Psest_0554 0.35 -0.9 607,403 - Psest_0554 0.39 -0.7 607,809 + Psest_0554 0.73 -0.3 607,809 + Psest_0554 0.73 +0.2 607,809 + Psest_0554 0.73 +1.7 607,809 + Psest_0554 0.73 +0.4 607,809 + Psest_0554 0.73 -2.3 607,809 + Psest_0554 0.73 +0.1 607,809 + Psest_0554 0.73 +0.1 607,809 + Psest_0554 0.73 -1.1 607,810 - Psest_0554 0.73 -0.1 607,810 - Psest_0554 0.73 -0.3 607,810 - Psest_0554 0.73 +0.9 607,810 - Psest_0554 0.73 +0.3 607,811 + Psest_0554 0.73 -0.1 607,811 + Psest_0554 0.73 +0.3 607,811 + Psest_0554 0.73 +1.1 607,811 + Psest_0554 0.73 +0.2 607,811 + Psest_0554 0.73 +1.8 607,811 + Psest_0554 0.73 +0.0 607,811 + Psest_0554 0.73 +2.2 607,811 + Psest_0554 0.73 +1.7 607,811 + Psest_0554 0.73 +1.1 607,811 + Psest_0554 0.73 +0.5 607,811 + Psest_0554 0.73 -0.3 607,811 + Psest_0554 0.73 -0.3 607,811 + Psest_0554 0.73 +1.7 607,811 + Psest_0554 0.73 -0.1 607,811 + Psest_0554 0.73 +0.2 607,811 + Psest_0554 0.73 +0.4 607,812 - Psest_0554 0.74 -0.1 607,812 - Psest_0554 0.74 -1.1 607,812 - Psest_0554 0.74 +0.6 607,812 - Psest_0554 0.74 +1.4 607,812 - Psest_0554 0.74 -2.1 607,812 - Psest_0554 0.74 +0.7 607,812 - Psest_0554 0.74 -0.1 607,826 + Psest_0554 0.75 +0.8 607,826 + Psest_0554 0.75 +1.8 607,827 - Psest_0554 0.75 +0.7 607,827 - Psest_0554 0.75 -1.2 607,827 - Psest_0554 0.75 -0.7 608,163 + -1.3 608,163 + -0.7 608,163 + +3.4 608,164 - +2.2 608,255 + -0.3 608,255 + +1.1 608,405 + Psest_0555 0.14 +0.6 608,405 + Psest_0555 0.14 +0.9 608,405 + Psest_0555 0.14 -1.0 608,405 + Psest_0555 0.14 -0.1 608,405 + Psest_0555 0.14 -2.7 608,405 + Psest_0555 0.14 -1.8 608,406 - Psest_0555 0.14 -0.1 608,406 - Psest_0555 0.14 -0.7 608,406 - Psest_0555 0.14 -1.5 608,468 + Psest_0555 0.19 -0.5 608,468 + Psest_0555 0.19 +1.1 608,468 + Psest_0555 0.19 +0.4 608,469 - Psest_0555 0.19 +0.5 608,471 + Psest_0555 0.19 -0.2 608,472 - Psest_0555 0.19 -0.4 608,472 - Psest_0555 0.19 +0.1 608,654 + Psest_0555 0.31 +0.7 608,654 + Psest_0555 0.31 -2.9 608,654 + Psest_0555 0.31 -0.6 608,655 - Psest_0555 0.31 +0.7 608,655 - Psest_0555 0.31 -0.7 608,919 - Psest_0555 0.49 -2.0 608,942 + Psest_0555 0.51 -0.2 608,942 + Psest_0555 0.51 -1.3 608,942 + Psest_0555 0.51 -2.1 608,943 - Psest_0555 0.51 -0.9 608,943 - Psest_0555 0.51 -0.7 608,943 - Psest_0555 0.51 -1.2 609,092 + Psest_0555 0.61 -1.5 609,092 + Psest_0555 0.61 -0.9 609,092 + Psest_0555 0.61 -0.3 609,093 - Psest_0555 0.61 +0.1
Or see this region's nucleotide sequence