Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4081

Experiment: LB 30C timecourse2 timepoint 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4079 and Psest_4080 are separated by 16 nucleotidesPsest_4080 and Psest_4081 are separated by 39 nucleotidesPsest_4081 and Psest_4082 are separated by 64 nucleotidesPsest_4082 and Psest_4083 are separated by 1 nucleotides Psest_4079: Psest_4079 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 4,255,208 to 4,256,017 _4079 Psest_4080: Psest_4080 - Carbonic anhydrase, at 4,256,034 to 4,256,732 _4080 Psest_4081: Psest_4081 - Glutaminase (EC 3.5.1.2) (from data), at 4,256,772 to 4,257,680 _4081 Psest_4082: Psest_4082 - hypothetical protein, at 4,257,745 to 4,258,047 _4082 Psest_4083: Psest_4083 - Predicted permease, at 4,258,049 to 4,258,990 _4083 Position (kb) 4256 4257 4258Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4255.859 kb on + strand, within Psest_4079at 4255.879 kb on + strand, within Psest_4079at 4255.879 kb on + strand, within Psest_4079at 4255.880 kb on - strand, within Psest_4079at 4255.880 kb on - strand, within Psest_4079at 4255.973 kb on + strandat 4255.973 kb on + strandat 4255.973 kb on + strandat 4256.047 kb on + strandat 4256.119 kb on + strand, within Psest_4080at 4256.119 kb on + strand, within Psest_4080at 4256.119 kb on + strand, within Psest_4080at 4256.120 kb on - strand, within Psest_4080at 4256.149 kb on + strand, within Psest_4080at 4256.149 kb on + strand, within Psest_4080at 4256.149 kb on + strand, within Psest_4080at 4256.150 kb on - strand, within Psest_4080at 4256.150 kb on - strand, within Psest_4080at 4256.582 kb on + strand, within Psest_4080at 4256.582 kb on + strand, within Psest_4080at 4256.648 kb on - strand, within Psest_4080at 4256.648 kb on - strand, within Psest_4080at 4256.750 kb on - strandat 4256.968 kb on + strand, within Psest_4081at 4256.969 kb on - strand, within Psest_4081at 4257.124 kb on + strand, within Psest_4081at 4257.124 kb on + strand, within Psest_4081at 4257.124 kb on + strand, within Psest_4081at 4257.124 kb on + strand, within Psest_4081at 4257.125 kb on - strand, within Psest_4081at 4257.125 kb on - strand, within Psest_4081at 4257.125 kb on - strand, within Psest_4081at 4257.125 kb on - strand, within Psest_4081at 4257.181 kb on + strand, within Psest_4081at 4257.181 kb on + strand, within Psest_4081at 4257.181 kb on + strand, within Psest_4081at 4257.182 kb on - strand, within Psest_4081at 4257.215 kb on - strand, within Psest_4081at 4257.610 kb on + strandat 4257.610 kb on + strandat 4257.611 kb on - strandat 4257.611 kb on - strandat 4257.611 kb on - strandat 4257.786 kb on - strand, within Psest_4082at 4257.786 kb on - strand, within Psest_4082at 4257.809 kb on + strand, within Psest_4082at 4257.809 kb on + strand, within Psest_4082at 4257.810 kb on - strand, within Psest_4082at 4257.812 kb on + strand, within Psest_4082at 4257.813 kb on - strand, within Psest_4082at 4258.090 kb on - strandat 4258.206 kb on + strand, within Psest_4083at 4258.206 kb on + strand, within Psest_4083at 4258.206 kb on + strand, within Psest_4083at 4258.428 kb on + strand, within Psest_4083at 4258.429 kb on - strand, within Psest_4083at 4258.429 kb on - strand, within Psest_4083at 4258.627 kb on + strand, within Psest_4083at 4258.627 kb on + strand, within Psest_4083at 4258.627 kb on + strand, within Psest_4083at 4258.628 kb on - strand, within Psest_4083at 4258.628 kb on - strand, within Psest_4083at 4258.628 kb on - strand, within Psest_4083at 4258.628 kb on - strand, within Psest_4083at 4258.628 kb on - strand, within Psest_4083at 4258.628 kb on - strand, within Psest_4083at 4258.628 kb on - strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.629 kb on + strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.630 kb on - strand, within Psest_4083at 4258.662 kb on + strand, within Psest_4083at 4258.662 kb on + strand, within Psest_4083at 4258.662 kb on + strand, within Psest_4083at 4258.662 kb on + strand, within Psest_4083at 4258.662 kb on + strand, within Psest_4083

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 30C timecourse2 timepoint 2
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4,255,859 + Psest_4079 0.80 -0.5
4,255,879 + Psest_4079 0.83 -1.3
4,255,879 + Psest_4079 0.83 +0.4
4,255,880 - Psest_4079 0.83 -0.9
4,255,880 - Psest_4079 0.83 +1.2
4,255,973 + +0.7
4,255,973 + -0.4
4,255,973 + +0.1
4,256,047 + +3.0
4,256,119 + Psest_4080 0.12 +0.1
4,256,119 + Psest_4080 0.12 -1.5
4,256,119 + Psest_4080 0.12 +0.7
4,256,120 - Psest_4080 0.12 +1.3
4,256,149 + Psest_4080 0.16 -1.9
4,256,149 + Psest_4080 0.16 +0.5
4,256,149 + Psest_4080 0.16 -2.0
4,256,150 - Psest_4080 0.17 -0.0
4,256,150 - Psest_4080 0.17 -0.8
4,256,582 + Psest_4080 0.78 -0.3
4,256,582 + Psest_4080 0.78 -1.4
4,256,648 - Psest_4080 0.88 +1.3
4,256,648 - Psest_4080 0.88 -1.8
4,256,750 - -0.6
4,256,968 + Psest_4081 0.22 -0.0
4,256,969 - Psest_4081 0.22 -0.8
4,257,124 + Psest_4081 0.39 -1.5
4,257,124 + Psest_4081 0.39 -1.6
4,257,124 + Psest_4081 0.39 +2.2
4,257,124 + Psest_4081 0.39 -1.8
4,257,125 - Psest_4081 0.39 -0.0
4,257,125 - Psest_4081 0.39 +1.2
4,257,125 - Psest_4081 0.39 -0.6
4,257,125 - Psest_4081 0.39 +1.1
4,257,181 + Psest_4081 0.45 +1.0
4,257,181 + Psest_4081 0.45 +0.6
4,257,181 + Psest_4081 0.45 -0.0
4,257,182 - Psest_4081 0.45 +1.4
4,257,215 - Psest_4081 0.49 -1.6
4,257,610 + -0.4
4,257,610 + +0.9
4,257,611 - -0.2
4,257,611 - -2.9
4,257,611 - -1.4
4,257,786 - Psest_4082 0.14 +1.0
4,257,786 - Psest_4082 0.14 -2.8
4,257,809 + Psest_4082 0.21 +0.5
4,257,809 + Psest_4082 0.21 +0.4
4,257,810 - Psest_4082 0.21 +0.3
4,257,812 + Psest_4082 0.22 +0.7
4,257,813 - Psest_4082 0.22 -1.5
4,258,090 - +0.6
4,258,206 + Psest_4083 0.17 +0.1
4,258,206 + Psest_4083 0.17 -1.6
4,258,206 + Psest_4083 0.17 -1.3
4,258,428 + Psest_4083 0.40 +0.3
4,258,429 - Psest_4083 0.40 +0.0
4,258,429 - Psest_4083 0.40 -1.2
4,258,627 + Psest_4083 0.61 -0.2
4,258,627 + Psest_4083 0.61 +0.2
4,258,627 + Psest_4083 0.61 -0.5
4,258,628 - Psest_4083 0.61 -1.6
4,258,628 - Psest_4083 0.61 -0.2
4,258,628 - Psest_4083 0.61 +2.0
4,258,628 - Psest_4083 0.61 -0.5
4,258,628 - Psest_4083 0.61 -0.0
4,258,628 - Psest_4083 0.61 -0.0
4,258,628 - Psest_4083 0.61 +2.1
4,258,629 + Psest_4083 0.62 +0.2
4,258,629 + Psest_4083 0.62 -2.2
4,258,629 + Psest_4083 0.62 +0.1
4,258,629 + Psest_4083 0.62 +0.0
4,258,629 + Psest_4083 0.62 +2.1
4,258,629 + Psest_4083 0.62 -1.0
4,258,629 + Psest_4083 0.62 -1.5
4,258,629 + Psest_4083 0.62 +1.0
4,258,629 + Psest_4083 0.62 -1.5
4,258,629 + Psest_4083 0.62 -2.7
4,258,629 + Psest_4083 0.62 -0.8
4,258,629 + Psest_4083 0.62 -1.1
4,258,629 + Psest_4083 0.62 -0.0
4,258,629 + Psest_4083 0.62 +0.5
4,258,629 + Psest_4083 0.62 +0.2
4,258,629 + Psest_4083 0.62 +0.3
4,258,629 + Psest_4083 0.62 +0.1
4,258,629 + Psest_4083 0.62 -0.2
4,258,629 + Psest_4083 0.62 +0.0
4,258,629 + Psest_4083 0.62 +0.7
4,258,629 + Psest_4083 0.62 -0.5
4,258,629 + Psest_4083 0.62 +2.4
4,258,629 + Psest_4083 0.62 +0.7
4,258,629 + Psest_4083 0.62 -1.9
4,258,629 + Psest_4083 0.62 -0.1
4,258,629 + Psest_4083 0.62 +0.4
4,258,629 + Psest_4083 0.62 -0.8
4,258,629 + Psest_4083 0.62 +0.2
4,258,629 + Psest_4083 0.62 +0.7
4,258,629 + Psest_4083 0.62 -0.0
4,258,629 + Psest_4083 0.62 +0.4
4,258,629 + Psest_4083 0.62 +0.7
4,258,629 + Psest_4083 0.62 -2.4
4,258,629 + Psest_4083 0.62 -2.4
4,258,629 + Psest_4083 0.62 -0.8
4,258,629 + Psest_4083 0.62 +0.3
4,258,629 + Psest_4083 0.62 -0.5
4,258,629 + Psest_4083 0.62 -0.1
4,258,629 + Psest_4083 0.62 +0.5
4,258,629 + Psest_4083 0.62 +1.2
4,258,629 + Psest_4083 0.62 +0.4
4,258,629 + Psest_4083 0.62 +0.1
4,258,629 + Psest_4083 0.62 +0.1
4,258,629 + Psest_4083 0.62 -0.7
4,258,630 - Psest_4083 0.62 +0.2
4,258,630 - Psest_4083 0.62 -1.6
4,258,630 - Psest_4083 0.62 -0.0
4,258,630 - Psest_4083 0.62 -0.6
4,258,630 - Psest_4083 0.62 +1.0
4,258,630 - Psest_4083 0.62 -0.3
4,258,630 - Psest_4083 0.62 -1.0
4,258,630 - Psest_4083 0.62 +0.1
4,258,630 - Psest_4083 0.62 -1.8
4,258,630 - Psest_4083 0.62 +1.7
4,258,630 - Psest_4083 0.62 +0.3
4,258,630 - Psest_4083 0.62 +2.1
4,258,630 - Psest_4083 0.62 +2.4
4,258,630 - Psest_4083 0.62 -1.2
4,258,630 - Psest_4083 0.62 +1.5
4,258,630 - Psest_4083 0.62 -1.2
4,258,630 - Psest_4083 0.62 +1.0
4,258,630 - Psest_4083 0.62 +0.4
4,258,630 - Psest_4083 0.62 +0.6
4,258,630 - Psest_4083 0.62 +0.1
4,258,630 - Psest_4083 0.62 -0.0
4,258,630 - Psest_4083 0.62 -0.0
4,258,630 - Psest_4083 0.62 +1.6
4,258,630 - Psest_4083 0.62 -2.0
4,258,630 - Psest_4083 0.62 -0.2
4,258,630 - Psest_4083 0.62 -0.5
4,258,630 - Psest_4083 0.62 +1.5
4,258,630 - Psest_4083 0.62 -0.3
4,258,630 - Psest_4083 0.62 -0.5
4,258,630 - Psest_4083 0.62 +1.1
4,258,630 - Psest_4083 0.62 +0.2
4,258,630 - Psest_4083 0.62 -0.3
4,258,630 - Psest_4083 0.62 -0.9
4,258,630 - Psest_4083 0.62 -0.3
4,258,630 - Psest_4083 0.62 -0.8
4,258,662 + Psest_4083 0.65 +2.9
4,258,662 + Psest_4083 0.65 +2.7
4,258,662 + Psest_4083 0.65 -2.0
4,258,662 + Psest_4083 0.65 -1.0
4,258,662 + Psest_4083 0.65 -0.0

Or see this region's nucleotide sequence