Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3870

Experiment: LB 30C timecourse2 timepoint 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB 30C timecourse2 timepoint 2
4,040,163	+				+1.6
4,040,163	+				-1.5
4,040,163	+				-1.2
4,040,163	+				-1.1
4,040,164	-				+0.4
4,040,164	-				+0.7
4,040,164	-				-0.2
4,040,164	-				+0.7
4,040,164	-				+0.9
4,040,190	+				-1.4
4,040,190	+				-0.8
4,040,190	+				-0.0
4,040,190	+				+1.7
4,040,190	+				+1.9
4,040,190	+				-2.9
4,040,190	+				-2.8
4,040,190	+				-0.2
4,040,190	+				-0.9
4,040,190	+				+1.2
4,040,190	+				-2.2
4,040,190	+				+0.6
4,040,190	+				+1.0
4,040,190	+				+1.1
4,040,190	+				+1.1
4,040,190	+				+1.0
4,040,190	+				-0.0
4,040,190	+				+1.3
4,040,190	+				-0.3
4,040,190	+				+0.6
4,040,190	+				-0.1
4,040,191	-				-0.7
4,040,191	-				-0.3
4,040,191	-				-0.0
4,040,191	-				-3.2
4,040,191	-				+0.2
4,040,191	-				-0.1
4,040,191	-				+0.8
4,040,191	-				-0.8
4,040,191	-				-0.0
4,040,191	-				+0.1
4,040,191	-				-1.0
4,040,191	-				+0.5
4,040,191	-				+0.2
4,040,191	-				+0.5
4,040,191	-				-2.5
4,040,191	-				-2.1
4,040,191	-				+0.1
4,040,191	-				-2.3
4,040,191	-				+0.8
4,040,191	-				-0.2
4,040,191	-				+0.6
4,040,416	+		Psest_3869	0.31	+0.6
4,040,417	-		Psest_3869	0.31	+0.2
4,040,598	-		Psest_3869	0.51	-0.2
4,040,661	+		Psest_3869	0.58	+3.3
4,040,661	+		Psest_3869	0.58	-0.8
4,040,661	+		Psest_3869	0.58	+0.4
4,040,662	-		Psest_3869	0.58	-2.8
4,040,662	-		Psest_3869	0.58	-0.3
4,040,679	+		Psest_3869	0.60	-0.8
4,040,679	+		Psest_3869	0.60	-1.2
4,040,679	+		Psest_3869	0.60	-1.6
4,040,679	+		Psest_3869	0.60	-0.8
4,040,679	+		Psest_3869	0.60	+0.7
4,040,679	+		Psest_3869	0.60	+0.7
4,040,680	-		Psest_3869	0.60	-2.0
4,040,680	-		Psest_3869	0.60	-0.0
4,040,794	+		Psest_3869	0.73	-2.3
4,040,795	-		Psest_3869	0.73	-1.9
4,041,034	+				-0.5
4,041,084	+				+1.2
4,041,084	+				-0.5
4,041,084	+				-0.3
4,041,085	-				-0.2
4,041,134	+				-0.1
4,041,134	+				+1.0
4,041,134	+				-1.2
4,041,134	+				+1.1
4,041,135	-				-1.2
4,041,135	-				+0.3
4,041,135	-				-0.9
4,041,135	-				-1.9
4,041,135	-				-0.2
4,041,135	-				-0.0
4,041,135	-				+0.3
4,041,161	+				-0.1
4,041,161	+				-1.2
4,041,161	+				-0.8
4,041,161	+				+1.3
4,041,161	+				+0.1
4,041,161	+				-1.6
4,041,161	+				+1.3
4,041,161	+				-0.0
4,041,161	+				-2.0
4,041,161	+				+3.0
4,041,161	+				+3.0
4,041,161	+				+2.0
4,041,161	+				-2.0
4,041,161	+				+2.6
4,041,161	+				+1.0
4,041,161	+				-0.8
4,041,161	+				-0.0
4,041,161	+				-1.7
4,041,161	+				-0.0
4,041,161	+				+0.7
4,041,161	+				-2.1
4,041,161	+				-0.4
4,041,161	+				-0.4
4,041,161	+				+0.7
4,041,161	+				-1.9
4,041,162	-				-1.6
4,041,162	-				+1.4
4,041,162	-				-0.7
4,041,162	-				-0.3
4,041,162	-				-0.1
4,041,162	-				-1.2
4,041,162	-				-1.8
4,041,162	-				+0.1
4,041,162	-				-2.0
4,041,162	-				-2.3
4,041,162	-				+0.6
4,041,162	-				+0.4
4,041,162	-				+1.1
4,041,162	-				-2.5
4,041,162	-				-0.1
4,041,162	-				-0.1
4,041,162	-				+0.2
4,041,315	+		Psest_3870	0.24	+0.9
4,041,315	+		Psest_3870	0.24	+1.0
4,041,315	+		Psest_3870	0.24	+0.6
4,041,316	-		Psest_3870	0.24	-1.9
4,041,316	-		Psest_3870	0.24	-0.5
4,041,316	-		Psest_3870	0.24	+0.8
4,041,316	-		Psest_3870	0.24	-0.6
4,041,316	-		Psest_3870	0.24	-2.0
4,041,316	-		Psest_3870	0.24	+0.2
4,041,361	+		Psest_3870	0.29	-3.0
4,041,362	-		Psest_3870	0.29	+1.7
4,041,362	-		Psest_3870	0.29	+2.4
4,041,362	-		Psest_3870	0.29	+0.0
4,041,362	-		Psest_3870	0.29	-0.2
4,041,477	+		Psest_3870	0.42	+0.5
4,041,477	+		Psest_3870	0.42	+1.3
4,041,478	-		Psest_3870	0.42	+0.8
4,041,540	-		Psest_3870	0.48	-0.1
4,041,540	-		Psest_3870	0.48	+0.2
4,041,543	+		Psest_3870	0.49	-1.3
4,041,543	+		Psest_3870	0.49	-0.4
4,041,544	-		Psest_3870	0.49	+0.6
4,041,698	-		Psest_3870	0.66	-0.0
4,041,698	-		Psest_3870	0.66	-1.6
4,042,047	+				+0.0
4,042,047	+				+0.0
4,042,047	+				+1.1
4,042,047	+				-2.6
4,042,048	-				-0.8
4,042,048	-				+0.0
4,042,048	-				+0.6
4,042,160	+				+1.2
4,042,160	+				+0.8
4,042,570	-		Psest_3871	0.69	-1.5
4,042,619	+		Psest_3871	0.76	-0.0
4,042,698	+		Psest_3871	0.88	+0.3
4,042,698	+		Psest_3871	0.88	+0.1
4,042,699	-		Psest_3871	0.88	-0.1
4,042,699	-		Psest_3871	0.88	+0.5
4,042,699	-		Psest_3871	0.88	-3.1
4,042,699	-		Psest_3871	0.88	-0.4
4,042,758	+				+1.2
4,042,759	-				+2.4
4,042,759	-				-0.0
4,042,759	-				+0.3
4,042,759	-				-1.6
4,042,759	-				-0.2
4,042,759	-				-0.3
4,042,876	+				-1.1
4,042,876	+				+1.4
4,042,877	-				+1.9
4,042,877	-				-0.3
4,042,912	+				+1.2
4,042,912	+				+1.6
4,042,963	+		Psest_3872	0.11	-0.1
4,042,963	+		Psest_3872	0.11	-0.5