Experiment: LB 30C timecourse2 timepoint 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3848 and Psest_3849 are separated by 51 nucleotides Psest_3849 and Psest_3850 are separated by 142 nucleotides
Psest_3848: Psest_3848 - hypothetical protein, at 4,020,191 to 4,020,952
_3848
Psest_3849: Psest_3849 - Membrane proteins related to metalloendopeptidases, at 4,021,004 to 4,021,900
_3849
Psest_3850: Psest_3850 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 4,022,043 to 4,022,960
_3850
Position (kb) 4021
4022 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4020.010 kb on - strand at 4020.029 kb on - strand at 4020.044 kb on + strand at 4020.105 kb on - strand at 4020.114 kb on + strand at 4020.114 kb on + strand at 4020.115 kb on - strand at 4020.115 kb on - strand at 4020.115 kb on - strand at 4020.115 kb on - strand at 4020.115 kb on - strand at 4020.115 kb on - strand at 4020.317 kb on + strand, within Psest_3848 at 4020.318 kb on - strand, within Psest_3848 at 4020.318 kb on - strand, within Psest_3848 at 4020.318 kb on - strand, within Psest_3848 at 4020.318 kb on - strand, within Psest_3848 at 4020.374 kb on + strand, within Psest_3848 at 4020.374 kb on + strand, within Psest_3848 at 4020.375 kb on - strand, within Psest_3848 at 4020.375 kb on - strand, within Psest_3848 at 4020.375 kb on - strand, within Psest_3848 at 4020.377 kb on + strand, within Psest_3848 at 4020.377 kb on + strand, within Psest_3848 at 4020.377 kb on + strand, within Psest_3848 at 4020.377 kb on + strand, within Psest_3848 at 4020.377 kb on + strand, within Psest_3848 at 4020.377 kb on + strand, within Psest_3848 at 4020.377 kb on + strand, within Psest_3848 at 4020.378 kb on - strand, within Psest_3848 at 4020.378 kb on - strand, within Psest_3848 at 4020.378 kb on - strand, within Psest_3848 at 4020.378 kb on - strand, within Psest_3848 at 4020.378 kb on - strand, within Psest_3848 at 4020.378 kb on - strand, within Psest_3848 at 4020.378 kb on - strand, within Psest_3848 at 4020.378 kb on - strand, within Psest_3848 at 4020.378 kb on - strand, within Psest_3848 at 4020.419 kb on + strand, within Psest_3848 at 4020.420 kb on - strand, within Psest_3848 at 4020.467 kb on + strand, within Psest_3848 at 4020.467 kb on + strand, within Psest_3848 at 4020.467 kb on + strand, within Psest_3848 at 4020.467 kb on + strand, within Psest_3848 at 4020.467 kb on + strand, within Psest_3848 at 4020.467 kb on + strand, within Psest_3848 at 4020.467 kb on + strand, within Psest_3848 at 4020.467 kb on + strand, within Psest_3848 at 4020.467 kb on + strand, within Psest_3848 at 4020.467 kb on + strand, within Psest_3848 at 4020.467 kb on + strand, within Psest_3848 at 4020.467 kb on + strand, within Psest_3848 at 4020.467 kb on + strand, within Psest_3848 at 4020.467 kb on + strand, within Psest_3848 at 4020.468 kb on - strand, within Psest_3848 at 4020.468 kb on - strand, within Psest_3848 at 4020.468 kb on - strand, within Psest_3848 at 4020.468 kb on - strand, within Psest_3848 at 4020.468 kb on - strand, within Psest_3848 at 4020.468 kb on - strand, within Psest_3848 at 4020.468 kb on - strand, within Psest_3848 at 4020.468 kb on - strand, within Psest_3848 at 4020.468 kb on - strand, within Psest_3848 at 4020.468 kb on - strand, within Psest_3848 at 4020.468 kb on - strand, within Psest_3848 at 4020.468 kb on - strand, within Psest_3848 at 4020.468 kb on - strand, within Psest_3848 at 4020.468 kb on - strand, within Psest_3848 at 4020.468 kb on - strand, within Psest_3848 at 4020.468 kb on - strand, within Psest_3848 at 4020.468 kb on - strand, within Psest_3848 at 4020.527 kb on + strand, within Psest_3848 at 4020.527 kb on + strand, within Psest_3848 at 4020.527 kb on + strand, within Psest_3848 at 4020.527 kb on + strand, within Psest_3848 at 4020.527 kb on + strand, within Psest_3848 at 4020.527 kb on + strand, within Psest_3848 at 4020.527 kb on + strand, within Psest_3848 at 4020.527 kb on + strand, within Psest_3848 at 4020.527 kb on + strand, within Psest_3848 at 4020.527 kb on + strand, within Psest_3848 at 4020.527 kb on + strand, within Psest_3848 at 4020.527 kb on + strand, within Psest_3848 at 4020.527 kb on + strand, within Psest_3848 at 4020.527 kb on + strand, within Psest_3848 at 4020.527 kb on + strand, within Psest_3848 at 4020.528 kb on - strand, within Psest_3848 at 4020.528 kb on - strand, within Psest_3848 at 4020.528 kb on - strand, within Psest_3848 at 4020.528 kb on - strand, within Psest_3848 at 4020.528 kb on - strand, within Psest_3848 at 4020.528 kb on - strand, within Psest_3848 at 4020.528 kb on - strand, within Psest_3848 at 4020.528 kb on - strand, within Psest_3848 at 4020.528 kb on - strand, within Psest_3848 at 4020.528 kb on - strand, within Psest_3848 at 4020.528 kb on - strand, within Psest_3848 at 4020.528 kb on - strand, within Psest_3848 at 4020.528 kb on - strand, within Psest_3848 at 4020.528 kb on - strand, within Psest_3848 at 4020.656 kb on + strand, within Psest_3848 at 4020.656 kb on + strand, within Psest_3848 at 4020.662 kb on + strand, within Psest_3848 at 4020.662 kb on + strand, within Psest_3848 at 4020.662 kb on + strand, within Psest_3848 at 4020.662 kb on + strand, within Psest_3848 at 4020.662 kb on + strand, within Psest_3848 at 4020.662 kb on + strand, within Psest_3848 at 4020.662 kb on + strand, within Psest_3848 at 4020.662 kb on + strand, within Psest_3848 at 4020.663 kb on - strand, within Psest_3848 at 4020.677 kb on + strand, within Psest_3848 at 4020.677 kb on + strand, within Psest_3848 at 4020.677 kb on + strand, within Psest_3848 at 4020.684 kb on + strand, within Psest_3848 at 4020.848 kb on + strand, within Psest_3848 at 4020.848 kb on + strand, within Psest_3848 at 4020.849 kb on - strand, within Psest_3848 at 4020.849 kb on - strand, within Psest_3848 at 4020.851 kb on + strand, within Psest_3848 at 4020.851 kb on + strand, within Psest_3848 at 4020.851 kb on + strand, within Psest_3848 at 4020.851 kb on + strand, within Psest_3848 at 4020.851 kb on + strand, within Psest_3848 at 4020.851 kb on + strand, within Psest_3848 at 4020.851 kb on + strand, within Psest_3848 at 4020.851 kb on + strand, within Psest_3848 at 4020.851 kb on + strand, within Psest_3848 at 4020.852 kb on - strand, within Psest_3848 at 4020.852 kb on - strand, within Psest_3848 at 4020.852 kb on - strand, within Psest_3848 at 4020.852 kb on - strand, within Psest_3848 at 4020.852 kb on - strand, within Psest_3848 at 4020.852 kb on - strand, within Psest_3848 at 4020.942 kb on + strand at 4020.950 kb on + strand at 4020.950 kb on + strand at 4020.950 kb on + strand at 4020.950 kb on + strand at 4020.950 kb on + strand at 4020.950 kb on + strand at 4020.950 kb on + strand at 4020.951 kb on - strand at 4020.951 kb on - strand at 4021.005 kb on + strand at 4021.097 kb on + strand, within Psest_3849 at 4021.097 kb on + strand, within Psest_3849 at 4021.218 kb on + strand, within Psest_3849 at 4021.218 kb on + strand, within Psest_3849 at 4021.219 kb on - strand, within Psest_3849 at 4021.219 kb on - strand, within Psest_3849 at 4021.219 kb on - strand, within Psest_3849 at 4021.398 kb on + strand, within Psest_3849 at 4021.399 kb on - strand, within Psest_3849 at 4021.461 kb on + strand, within Psest_3849 at 4021.462 kb on - strand, within Psest_3849 at 4021.462 kb on - strand, within Psest_3849 at 4021.515 kb on + strand, within Psest_3849 at 4021.516 kb on - strand, within Psest_3849 at 4021.516 kb on - strand, within Psest_3849 at 4021.797 kb on + strand, within Psest_3849 at 4021.797 kb on + strand, within Psest_3849 at 4021.797 kb on + strand, within Psest_3849 at 4021.797 kb on + strand, within Psest_3849 at 4021.797 kb on + strand, within Psest_3849 at 4021.797 kb on + strand, within Psest_3849 at 4021.797 kb on + strand, within Psest_3849 at 4021.798 kb on - strand, within Psest_3849 at 4021.798 kb on - strand, within Psest_3849 at 4021.798 kb on - strand, within Psest_3849 at 4021.798 kb on - strand, within Psest_3849 at 4021.824 kb on + strand at 4021.824 kb on + strand at 4021.824 kb on + strand at 4021.824 kb on + strand at 4021.824 kb on + strand at 4021.825 kb on - strand at 4021.825 kb on - strand at 4021.825 kb on - strand at 4021.825 kb on - strand at 4021.825 kb on - strand at 4021.825 kb on - strand at 4021.825 kb on - strand at 4021.825 kb on - strand at 4021.825 kb on - strand at 4021.825 kb on - strand at 4021.830 kb on + strand at 4021.831 kb on - strand at 4021.831 kb on - strand at 4021.831 kb on - strand at 4021.831 kb on - strand at 4021.913 kb on + strand at 4021.914 kb on - strand at 4021.920 kb on + strand at 4021.920 kb on + strand at 4021.920 kb on + strand at 4021.922 kb on + strand at 4021.922 kb on + strand at 4021.922 kb on + strand at 4021.922 kb on + strand at 4021.922 kb on + strand at 4021.922 kb on + strand at 4021.922 kb on + strand at 4021.922 kb on + strand at 4021.922 kb on + strand at 4021.923 kb on - strand at 4021.923 kb on - strand at 4021.923 kb on - strand at 4021.923 kb on - strand at 4021.923 kb on - strand at 4021.923 kb on - strand at 4021.923 kb on - strand at 4021.923 kb on - strand at 4021.923 kb on - strand at 4021.942 kb on + strand at 4021.942 kb on + strand at 4021.942 kb on + strand at 4021.943 kb on - strand at 4021.943 kb on - strand at 4021.943 kb on - strand at 4022.101 kb on + strand at 4022.101 kb on + strand at 4022.102 kb on - strand at 4022.102 kb on - strand at 4022.102 kb on - strand at 4022.102 kb on - strand at 4022.263 kb on - strand, within Psest_3850 at 4022.889 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse2 timepoint 2 remove 4,020,010 - +0.9 4,020,029 - +0.6 4,020,044 + -2.2 4,020,105 - -1.4 4,020,114 + +0.7 4,020,114 + +0.6 4,020,115 - +0.1 4,020,115 - +1.8 4,020,115 - -0.7 4,020,115 - +0.1 4,020,115 - -1.7 4,020,115 - +3.7 4,020,317 + Psest_3848 0.17 +0.7 4,020,318 - Psest_3848 0.17 -0.5 4,020,318 - Psest_3848 0.17 -0.7 4,020,318 - Psest_3848 0.17 +0.6 4,020,318 - Psest_3848 0.17 +2.5 4,020,374 + Psest_3848 0.24 -1.8 4,020,374 + Psest_3848 0.24 -0.7 4,020,375 - Psest_3848 0.24 -1.1 4,020,375 - Psest_3848 0.24 -1.1 4,020,375 - Psest_3848 0.24 +1.6 4,020,377 + Psest_3848 0.24 -0.4 4,020,377 + Psest_3848 0.24 -2.0 4,020,377 + Psest_3848 0.24 +0.6 4,020,377 + Psest_3848 0.24 -0.2 4,020,377 + Psest_3848 0.24 +0.7 4,020,377 + Psest_3848 0.24 -1.2 4,020,377 + Psest_3848 0.24 +0.3 4,020,378 - Psest_3848 0.25 +2.9 4,020,378 - Psest_3848 0.25 +1.6 4,020,378 - Psest_3848 0.25 +0.4 4,020,378 - Psest_3848 0.25 +0.1 4,020,378 - Psest_3848 0.25 +1.1 4,020,378 - Psest_3848 0.25 -0.4 4,020,378 - Psest_3848 0.25 +0.6 4,020,378 - Psest_3848 0.25 +0.6 4,020,378 - Psest_3848 0.25 +0.2 4,020,419 + Psest_3848 0.30 +1.0 4,020,420 - Psest_3848 0.30 +1.0 4,020,467 + Psest_3848 0.36 -0.8 4,020,467 + Psest_3848 0.36 +1.2 4,020,467 + Psest_3848 0.36 -0.2 4,020,467 + Psest_3848 0.36 +0.1 4,020,467 + Psest_3848 0.36 -0.1 4,020,467 + Psest_3848 0.36 +1.1 4,020,467 + Psest_3848 0.36 -2.0 4,020,467 + Psest_3848 0.36 +0.8 4,020,467 + Psest_3848 0.36 +0.8 4,020,467 + Psest_3848 0.36 -0.5 4,020,467 + Psest_3848 0.36 +0.9 4,020,467 + Psest_3848 0.36 -0.1 4,020,467 + Psest_3848 0.36 +1.6 4,020,467 + Psest_3848 0.36 -1.5 4,020,468 - Psest_3848 0.36 +0.6 4,020,468 - Psest_3848 0.36 +0.4 4,020,468 - Psest_3848 0.36 -0.4 4,020,468 - Psest_3848 0.36 -1.4 4,020,468 - Psest_3848 0.36 -1.2 4,020,468 - Psest_3848 0.36 +2.1 4,020,468 - Psest_3848 0.36 -1.3 4,020,468 - Psest_3848 0.36 +0.2 4,020,468 - Psest_3848 0.36 -0.2 4,020,468 - Psest_3848 0.36 -0.9 4,020,468 - Psest_3848 0.36 +0.6 4,020,468 - Psest_3848 0.36 -2.4 4,020,468 - Psest_3848 0.36 -1.0 4,020,468 - Psest_3848 0.36 -0.3 4,020,468 - Psest_3848 0.36 -2.6 4,020,468 - Psest_3848 0.36 -0.2 4,020,468 - Psest_3848 0.36 -0.6 4,020,527 + Psest_3848 0.44 -1.0 4,020,527 + Psest_3848 0.44 +0.6 4,020,527 + Psest_3848 0.44 +0.3 4,020,527 + Psest_3848 0.44 -0.8 4,020,527 + Psest_3848 0.44 +0.3 4,020,527 + Psest_3848 0.44 +1.2 4,020,527 + Psest_3848 0.44 -0.4 4,020,527 + Psest_3848 0.44 -0.6 4,020,527 + Psest_3848 0.44 +1.1 4,020,527 + Psest_3848 0.44 +1.4 4,020,527 + Psest_3848 0.44 -0.2 4,020,527 + Psest_3848 0.44 -0.9 4,020,527 + Psest_3848 0.44 -2.4 4,020,527 + Psest_3848 0.44 +1.6 4,020,527 + Psest_3848 0.44 +0.6 4,020,528 - Psest_3848 0.44 -0.0 4,020,528 - Psest_3848 0.44 -0.4 4,020,528 - Psest_3848 0.44 -1.9 4,020,528 - Psest_3848 0.44 -0.7 4,020,528 - Psest_3848 0.44 -0.9 4,020,528 - Psest_3848 0.44 -1.2 4,020,528 - Psest_3848 0.44 -1.0 4,020,528 - Psest_3848 0.44 +0.7 4,020,528 - Psest_3848 0.44 +0.3 4,020,528 - Psest_3848 0.44 -2.3 4,020,528 - Psest_3848 0.44 -0.0 4,020,528 - Psest_3848 0.44 -1.7 4,020,528 - Psest_3848 0.44 -1.9 4,020,528 - Psest_3848 0.44 +0.1 4,020,656 + Psest_3848 0.61 -2.3 4,020,656 + Psest_3848 0.61 +0.3 4,020,662 + Psest_3848 0.62 -0.0 4,020,662 + Psest_3848 0.62 -1.0 4,020,662 + Psest_3848 0.62 -1.2 4,020,662 + Psest_3848 0.62 -1.4 4,020,662 + Psest_3848 0.62 -1.8 4,020,662 + Psest_3848 0.62 -0.0 4,020,662 + Psest_3848 0.62 -2.6 4,020,662 + Psest_3848 0.62 -0.2 4,020,663 - Psest_3848 0.62 -0.3 4,020,677 + Psest_3848 0.64 -0.1 4,020,677 + Psest_3848 0.64 +0.9 4,020,677 + Psest_3848 0.64 +1.3 4,020,684 + Psest_3848 0.65 -1.1 4,020,848 + Psest_3848 0.86 -2.1 4,020,848 + Psest_3848 0.86 -1.4 4,020,849 - Psest_3848 0.86 -1.2 4,020,849 - Psest_3848 0.86 -0.4 4,020,851 + Psest_3848 0.87 +0.7 4,020,851 + Psest_3848 0.87 -2.1 4,020,851 + Psest_3848 0.87 +2.6 4,020,851 + Psest_3848 0.87 -0.8 4,020,851 + Psest_3848 0.87 -0.2 4,020,851 + Psest_3848 0.87 +0.8 4,020,851 + Psest_3848 0.87 -0.0 4,020,851 + Psest_3848 0.87 +0.6 4,020,851 + Psest_3848 0.87 +2.1 4,020,852 - Psest_3848 0.87 +1.3 4,020,852 - Psest_3848 0.87 -0.5 4,020,852 - Psest_3848 0.87 -0.3 4,020,852 - Psest_3848 0.87 +0.6 4,020,852 - Psest_3848 0.87 +0.3 4,020,852 - Psest_3848 0.87 +0.6 4,020,942 + -1.0 4,020,950 + +1.0 4,020,950 + -0.4 4,020,950 + +0.3 4,020,950 + -0.4 4,020,950 + -1.6 4,020,950 + -0.1 4,020,950 + -0.1 4,020,951 - +4.1 4,020,951 - +0.6 4,021,005 + +1.6 4,021,097 + Psest_3849 0.10 +1.4 4,021,097 + Psest_3849 0.10 -0.5 4,021,218 + Psest_3849 0.24 -0.4 4,021,218 + Psest_3849 0.24 +1.1 4,021,219 - Psest_3849 0.24 +0.3 4,021,219 - Psest_3849 0.24 -1.5 4,021,219 - Psest_3849 0.24 +0.4 4,021,398 + Psest_3849 0.44 -1.6 4,021,399 - Psest_3849 0.44 +0.2 4,021,461 + Psest_3849 0.51 +0.3 4,021,462 - Psest_3849 0.51 +1.5 4,021,462 - Psest_3849 0.51 -1.4 4,021,515 + Psest_3849 0.57 +0.3 4,021,516 - Psest_3849 0.57 -0.2 4,021,516 - Psest_3849 0.57 -2.6 4,021,797 + Psest_3849 0.88 +1.4 4,021,797 + Psest_3849 0.88 -0.2 4,021,797 + Psest_3849 0.88 +0.2 4,021,797 + Psest_3849 0.88 -0.2 4,021,797 + Psest_3849 0.88 +1.4 4,021,797 + Psest_3849 0.88 -1.0 4,021,797 + Psest_3849 0.88 -0.6 4,021,798 - Psest_3849 0.89 +0.9 4,021,798 - Psest_3849 0.89 +0.8 4,021,798 - Psest_3849 0.89 -1.0 4,021,798 - Psest_3849 0.89 +0.6 4,021,824 + +0.7 4,021,824 + -0.8 4,021,824 + -0.2 4,021,824 + +0.1 4,021,824 + +0.6 4,021,825 - -0.7 4,021,825 - -0.3 4,021,825 - +0.8 4,021,825 - +0.3 4,021,825 - +0.6 4,021,825 - -1.2 4,021,825 - +0.2 4,021,825 - -1.2 4,021,825 - -1.5 4,021,825 - -2.1 4,021,830 + +0.4 4,021,831 - -0.3 4,021,831 - +0.8 4,021,831 - -0.8 4,021,831 - +0.9 4,021,913 + -1.2 4,021,914 - -0.6 4,021,920 + -2.0 4,021,920 + +0.6 4,021,920 + +1.0 4,021,922 + +1.2 4,021,922 + -1.0 4,021,922 + +0.1 4,021,922 + -0.2 4,021,922 + -0.2 4,021,922 + +0.1 4,021,922 + -1.0 4,021,922 + -1.6 4,021,922 + +2.9 4,021,923 - +0.5 4,021,923 - +0.6 4,021,923 - -3.1 4,021,923 - -0.4 4,021,923 - +0.8 4,021,923 - +1.8 4,021,923 - -1.2 4,021,923 - +1.1 4,021,923 - +0.6 4,021,942 + -0.0 4,021,942 + +0.2 4,021,942 + +0.6 4,021,943 - +0.6 4,021,943 - +2.1 4,021,943 - -1.0 4,022,101 + +0.4 4,022,101 + +0.6 4,022,102 - +0.7 4,022,102 - +0.3 4,022,102 - +0.7 4,022,102 - +0.5 4,022,263 - Psest_3850 0.24 -1.5 4,022,889 - +0.7
Or see this region's nucleotide sequence