Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0343

Experiment: LB 30C timecourse2 timepoint 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0341 and Psest_0342 are separated by 24 nucleotidesPsest_0342 and Psest_0343 overlap by 4 nucleotidesPsest_0343 and Psest_0344 are separated by 135 nucleotides Psest_0341: Psest_0341 - flavoprotein, HI0933 family, at 362,768 to 363,952 _0341 Psest_0342: Psest_0342 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 363,977 to 364,843 _0342 Psest_0343: Psest_0343 - hypothetical membrane protein, TIGR01666, at 364,840 to 367,038 _0343 Psest_0344: Psest_0344 - Superfamily II DNA and RNA helicases, at 367,174 to 368,553 _0344 Position (kb) 364 365 366 367 368Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 363.957 kb on + strandat 363.957 kb on + strandat 363.957 kb on + strandat 363.957 kb on + strandat 363.957 kb on + strandat 363.958 kb on - strandat 363.958 kb on - strandat 363.982 kb on - strandat 363.982 kb on - strandat 363.982 kb on - strandat 364.122 kb on + strand, within Psest_0342at 364.122 kb on + strand, within Psest_0342at 364.123 kb on - strand, within Psest_0342at 364.162 kb on - strand, within Psest_0342at 364.162 kb on - strand, within Psest_0342at 364.192 kb on + strand, within Psest_0342at 364.192 kb on + strand, within Psest_0342at 364.192 kb on + strand, within Psest_0342at 364.193 kb on - strand, within Psest_0342at 364.193 kb on - strand, within Psest_0342at 364.193 kb on - strand, within Psest_0342at 364.274 kb on + strand, within Psest_0342at 364.274 kb on + strand, within Psest_0342at 364.274 kb on + strand, within Psest_0342at 364.274 kb on + strand, within Psest_0342at 364.274 kb on + strand, within Psest_0342at 364.274 kb on + strand, within Psest_0342at 364.274 kb on + strand, within Psest_0342at 364.274 kb on + strand, within Psest_0342at 364.275 kb on - strand, within Psest_0342at 364.275 kb on - strand, within Psest_0342at 364.275 kb on - strand, within Psest_0342at 364.275 kb on - strand, within Psest_0342at 364.275 kb on - strand, within Psest_0342at 364.275 kb on - strand, within Psest_0342at 364.275 kb on - strand, within Psest_0342at 364.275 kb on - strand, within Psest_0342at 364.275 kb on - strand, within Psest_0342at 364.275 kb on - strand, within Psest_0342at 364.278 kb on + strand, within Psest_0342at 364.278 kb on + strand, within Psest_0342at 364.278 kb on + strand, within Psest_0342at 364.278 kb on + strand, within Psest_0342at 364.278 kb on + strand, within Psest_0342at 364.278 kb on + strand, within Psest_0342at 364.278 kb on + strand, within Psest_0342at 364.278 kb on + strand, within Psest_0342at 364.278 kb on + strand, within Psest_0342at 364.279 kb on - strand, within Psest_0342at 364.279 kb on - strand, within Psest_0342at 364.279 kb on - strand, within Psest_0342at 364.279 kb on - strand, within Psest_0342at 364.279 kb on - strand, within Psest_0342at 364.279 kb on - strand, within Psest_0342at 364.279 kb on - strand, within Psest_0342at 364.279 kb on - strand, within Psest_0342at 364.279 kb on - strand, within Psest_0342at 364.279 kb on - strand, within Psest_0342at 364.279 kb on - strand, within Psest_0342at 364.279 kb on - strand, within Psest_0342at 364.279 kb on - strand, within Psest_0342at 364.279 kb on - strand, within Psest_0342at 364.279 kb on - strand, within Psest_0342at 364.279 kb on - strand, within Psest_0342at 364.279 kb on - strand, within Psest_0342at 364.325 kb on + strand, within Psest_0342at 364.326 kb on - strand, within Psest_0342at 364.326 kb on - strand, within Psest_0342at 364.326 kb on - strand, within Psest_0342at 364.367 kb on + strand, within Psest_0342at 364.368 kb on - strand, within Psest_0342at 364.480 kb on + strand, within Psest_0342at 364.481 kb on - strand, within Psest_0342at 364.481 kb on - strand, within Psest_0342at 364.491 kb on - strand, within Psest_0342at 364.496 kb on + strand, within Psest_0342at 364.496 kb on + strand, within Psest_0342at 364.496 kb on + strand, within Psest_0342at 364.496 kb on + strand, within Psest_0342at 364.496 kb on + strand, within Psest_0342at 364.496 kb on + strand, within Psest_0342at 364.497 kb on - strand, within Psest_0342at 364.497 kb on - strand, within Psest_0342at 364.497 kb on - strand, within Psest_0342at 364.497 kb on - strand, within Psest_0342at 364.497 kb on - strand, within Psest_0342at 364.539 kb on - strand, within Psest_0342at 364.539 kb on - strand, within Psest_0342at 364.572 kb on + strand, within Psest_0342at 364.572 kb on + strand, within Psest_0342at 364.572 kb on + strand, within Psest_0342at 364.572 kb on + strand, within Psest_0342at 364.572 kb on + strand, within Psest_0342at 364.572 kb on + strand, within Psest_0342at 364.572 kb on + strand, within Psest_0342at 364.572 kb on + strand, within Psest_0342at 364.573 kb on - strand, within Psest_0342at 364.573 kb on - strand, within Psest_0342at 364.573 kb on - strand, within Psest_0342at 364.747 kb on + strand, within Psest_0342at 364.748 kb on - strand, within Psest_0342at 364.791 kb on - strandat 364.842 kb on - strandat 364.948 kb on + strandat 365.022 kb on - strandat 365.162 kb on + strand, within Psest_0343at 365.162 kb on + strand, within Psest_0343at 365.162 kb on + strand, within Psest_0343at 365.162 kb on + strand, within Psest_0343at 365.162 kb on + strand, within Psest_0343at 365.162 kb on + strand, within Psest_0343at 365.162 kb on + strand, within Psest_0343at 365.163 kb on - strand, within Psest_0343at 365.163 kb on - strand, within Psest_0343at 365.163 kb on - strand, within Psest_0343at 365.163 kb on - strand, within Psest_0343at 365.163 kb on - strand, within Psest_0343at 365.336 kb on + strand, within Psest_0343at 365.337 kb on - strand, within Psest_0343at 365.701 kb on + strand, within Psest_0343at 365.701 kb on + strand, within Psest_0343at 365.701 kb on + strand, within Psest_0343at 365.726 kb on + strand, within Psest_0343at 365.726 kb on + strand, within Psest_0343at 365.727 kb on - strand, within Psest_0343at 365.768 kb on + strand, within Psest_0343at 366.205 kb on + strand, within Psest_0343at 366.205 kb on + strand, within Psest_0343at 366.205 kb on + strand, within Psest_0343at 366.205 kb on + strand, within Psest_0343at 366.205 kb on + strand, within Psest_0343at 366.205 kb on + strand, within Psest_0343at 366.205 kb on + strand, within Psest_0343at 366.205 kb on + strand, within Psest_0343at 366.205 kb on + strand, within Psest_0343at 366.206 kb on - strand, within Psest_0343at 366.206 kb on - strand, within Psest_0343at 366.206 kb on - strand, within Psest_0343at 366.206 kb on - strand, within Psest_0343at 366.206 kb on - strand, within Psest_0343at 366.206 kb on - strand, within Psest_0343at 366.206 kb on - strand, within Psest_0343at 366.206 kb on - strand, within Psest_0343at 366.243 kb on - strand, within Psest_0343at 366.293 kb on + strand, within Psest_0343at 366.293 kb on + strand, within Psest_0343at 366.293 kb on + strand, within Psest_0343at 366.293 kb on + strand, within Psest_0343at 366.294 kb on - strand, within Psest_0343at 366.305 kb on + strand, within Psest_0343at 366.305 kb on + strand, within Psest_0343at 366.467 kb on + strand, within Psest_0343at 366.468 kb on - strand, within Psest_0343at 366.476 kb on + strand, within Psest_0343at 366.476 kb on + strand, within Psest_0343at 366.477 kb on - strand, within Psest_0343at 366.653 kb on + strand, within Psest_0343at 366.653 kb on + strand, within Psest_0343at 366.653 kb on + strand, within Psest_0343at 366.653 kb on + strand, within Psest_0343at 366.653 kb on + strand, within Psest_0343at 366.653 kb on + strand, within Psest_0343at 366.653 kb on + strand, within Psest_0343at 366.653 kb on + strand, within Psest_0343at 366.653 kb on + strand, within Psest_0343at 366.653 kb on + strand, within Psest_0343at 366.653 kb on + strand, within Psest_0343at 366.653 kb on + strand, within Psest_0343at 366.653 kb on + strand, within Psest_0343at 366.653 kb on + strand, within Psest_0343at 366.653 kb on + strand, within Psest_0343at 366.654 kb on - strand, within Psest_0343at 366.654 kb on - strand, within Psest_0343at 366.654 kb on - strand, within Psest_0343at 366.654 kb on - strand, within Psest_0343at 366.654 kb on - strand, within Psest_0343at 366.654 kb on - strand, within Psest_0343at 366.654 kb on - strand, within Psest_0343at 366.654 kb on - strand, within Psest_0343at 366.927 kb on - strandat 366.960 kb on + strandat 367.057 kb on - strandat 367.057 kb on - strandat 367.057 kb on - strandat 367.057 kb on - strandat 367.065 kb on + strandat 367.066 kb on - strandat 367.186 kb on + strandat 367.187 kb on - strandat 367.187 kb on - strandat 367.187 kb on - strandat 367.212 kb on + strandat 367.212 kb on + strandat 367.212 kb on + strandat 367.212 kb on + strandat 367.212 kb on + strandat 367.212 kb on + strandat 367.213 kb on - strandat 367.434 kb on + strand, within Psest_0344at 367.890 kb on - strand, within Psest_0344at 367.991 kb on + strand, within Psest_0344at 367.991 kb on + strand, within Psest_0344at 367.991 kb on + strand, within Psest_0344at 367.992 kb on - strand, within Psest_0344at 367.992 kb on - strand, within Psest_0344at 367.992 kb on - strand, within Psest_0344at 367.992 kb on - strand, within Psest_0344

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB 30C timecourse2 timepoint 2
remove
363,957 + +1.9
363,957 + +0.2
363,957 + +1.6
363,957 + -1.0
363,957 + -2.2
363,958 - -3.0
363,958 - +0.2
363,982 - -1.5
363,982 - +1.2
363,982 - -1.3
364,122 + Psest_0342 0.17 +0.6
364,122 + Psest_0342 0.17 +1.3
364,123 - Psest_0342 0.17 -0.8
364,162 - Psest_0342 0.21 -0.8
364,162 - Psest_0342 0.21 +1.6
364,192 + Psest_0342 0.25 +0.7
364,192 + Psest_0342 0.25 +2.2
364,192 + Psest_0342 0.25 -0.8
364,193 - Psest_0342 0.25 -0.3
364,193 - Psest_0342 0.25 -0.0
364,193 - Psest_0342 0.25 -0.4
364,274 + Psest_0342 0.34 +0.2
364,274 + Psest_0342 0.34 +0.8
364,274 + Psest_0342 0.34 -1.6
364,274 + Psest_0342 0.34 +0.7
364,274 + Psest_0342 0.34 +1.7
364,274 + Psest_0342 0.34 +0.1
364,274 + Psest_0342 0.34 +0.7
364,274 + Psest_0342 0.34 -0.7
364,275 - Psest_0342 0.34 +0.1
364,275 - Psest_0342 0.34 -1.5
364,275 - Psest_0342 0.34 -0.3
364,275 - Psest_0342 0.34 +0.5
364,275 - Psest_0342 0.34 +1.6
364,275 - Psest_0342 0.34 +1.3
364,275 - Psest_0342 0.34 -0.2
364,275 - Psest_0342 0.34 +0.1
364,275 - Psest_0342 0.34 -1.1
364,275 - Psest_0342 0.34 -1.7
364,278 + Psest_0342 0.35 +0.2
364,278 + Psest_0342 0.35 +1.1
364,278 + Psest_0342 0.35 -0.3
364,278 + Psest_0342 0.35 -0.8
364,278 + Psest_0342 0.35 +1.3
364,278 + Psest_0342 0.35 +1.6
364,278 + Psest_0342 0.35 +1.6
364,278 + Psest_0342 0.35 -1.0
364,278 + Psest_0342 0.35 -0.2
364,279 - Psest_0342 0.35 -2.0
364,279 - Psest_0342 0.35 +0.7
364,279 - Psest_0342 0.35 -1.2
364,279 - Psest_0342 0.35 -0.9
364,279 - Psest_0342 0.35 +1.1
364,279 - Psest_0342 0.35 -0.3
364,279 - Psest_0342 0.35 +0.6
364,279 - Psest_0342 0.35 -0.1
364,279 - Psest_0342 0.35 -1.4
364,279 - Psest_0342 0.35 -2.2
364,279 - Psest_0342 0.35 +0.3
364,279 - Psest_0342 0.35 -0.0
364,279 - Psest_0342 0.35 -0.2
364,279 - Psest_0342 0.35 +1.0
364,279 - Psest_0342 0.35 +0.3
364,279 - Psest_0342 0.35 -1.4
364,279 - Psest_0342 0.35 -0.2
364,325 + Psest_0342 0.40 +2.3
364,326 - Psest_0342 0.40 +2.6
364,326 - Psest_0342 0.40 -1.1
364,326 - Psest_0342 0.40 +1.7
364,367 + Psest_0342 0.45 +0.7
364,368 - Psest_0342 0.45 -1.0
364,480 + Psest_0342 0.58 +0.6
364,481 - Psest_0342 0.58 +4.0
364,481 - Psest_0342 0.58 +0.2
364,491 - Psest_0342 0.59 -0.2
364,496 + Psest_0342 0.60 -0.9
364,496 + Psest_0342 0.60 +0.1
364,496 + Psest_0342 0.60 -1.1
364,496 + Psest_0342 0.60 +0.4
364,496 + Psest_0342 0.60 -0.1
364,496 + Psest_0342 0.60 -0.2
364,497 - Psest_0342 0.60 +2.1
364,497 - Psest_0342 0.60 -0.0
364,497 - Psest_0342 0.60 -0.0
364,497 - Psest_0342 0.60 +1.1
364,497 - Psest_0342 0.60 +3.1
364,539 - Psest_0342 0.65 -0.4
364,539 - Psest_0342 0.65 -0.4
364,572 + Psest_0342 0.69 -0.8
364,572 + Psest_0342 0.69 -1.8
364,572 + Psest_0342 0.69 +0.3
364,572 + Psest_0342 0.69 -0.9
364,572 + Psest_0342 0.69 +0.8
364,572 + Psest_0342 0.69 -0.0
364,572 + Psest_0342 0.69 +1.6
364,572 + Psest_0342 0.69 -0.4
364,573 - Psest_0342 0.69 -0.5
364,573 - Psest_0342 0.69 +0.1
364,573 - Psest_0342 0.69 +0.1
364,747 + Psest_0342 0.89 -1.0
364,748 - Psest_0342 0.89 +1.0
364,791 - +0.6
364,842 - +1.1
364,948 + +1.9
365,022 - -1.3
365,162 + Psest_0343 0.15 +0.2
365,162 + Psest_0343 0.15 -1.0
365,162 + Psest_0343 0.15 +1.0
365,162 + Psest_0343 0.15 -0.7
365,162 + Psest_0343 0.15 -0.8
365,162 + Psest_0343 0.15 -0.0
365,162 + Psest_0343 0.15 +0.6
365,163 - Psest_0343 0.15 +1.6
365,163 - Psest_0343 0.15 +0.6
365,163 - Psest_0343 0.15 +3.1
365,163 - Psest_0343 0.15 -1.2
365,163 - Psest_0343 0.15 -0.2
365,336 + Psest_0343 0.23 -0.8
365,337 - Psest_0343 0.23 -1.4
365,701 + Psest_0343 0.39 +0.9
365,701 + Psest_0343 0.39 -0.3
365,701 + Psest_0343 0.39 +2.0
365,726 + Psest_0343 0.40 -1.0
365,726 + Psest_0343 0.40 +0.6
365,727 - Psest_0343 0.40 -2.1
365,768 + Psest_0343 0.42 +0.8
366,205 + Psest_0343 0.62 -0.4
366,205 + Psest_0343 0.62 -3.2
366,205 + Psest_0343 0.62 -0.0
366,205 + Psest_0343 0.62 -0.2
366,205 + Psest_0343 0.62 -0.1
366,205 + Psest_0343 0.62 +0.4
366,205 + Psest_0343 0.62 -1.0
366,205 + Psest_0343 0.62 -0.1
366,205 + Psest_0343 0.62 -1.6
366,206 - Psest_0343 0.62 -0.0
366,206 - Psest_0343 0.62 +2.0
366,206 - Psest_0343 0.62 -1.6
366,206 - Psest_0343 0.62 +1.6
366,206 - Psest_0343 0.62 +1.1
366,206 - Psest_0343 0.62 -1.0
366,206 - Psest_0343 0.62 +0.4
366,206 - Psest_0343 0.62 -0.8
366,243 - Psest_0343 0.64 -2.4
366,293 + Psest_0343 0.66 +1.9
366,293 + Psest_0343 0.66 +0.6
366,293 + Psest_0343 0.66 -2.0
366,293 + Psest_0343 0.66 +1.6
366,294 - Psest_0343 0.66 -1.1
366,305 + Psest_0343 0.67 -0.4
366,305 + Psest_0343 0.67 +4.1
366,467 + Psest_0343 0.74 +0.7
366,468 - Psest_0343 0.74 +1.6
366,476 + Psest_0343 0.74 +0.8
366,476 + Psest_0343 0.74 +0.6
366,477 - Psest_0343 0.74 +0.1
366,653 + Psest_0343 0.82 -0.4
366,653 + Psest_0343 0.82 +0.1
366,653 + Psest_0343 0.82 +1.9
366,653 + Psest_0343 0.82 +1.6
366,653 + Psest_0343 0.82 -0.4
366,653 + Psest_0343 0.82 +1.5
366,653 + Psest_0343 0.82 -0.2
366,653 + Psest_0343 0.82 +1.6
366,653 + Psest_0343 0.82 -0.4
366,653 + Psest_0343 0.82 -1.9
366,653 + Psest_0343 0.82 +1.6
366,653 + Psest_0343 0.82 +0.6
366,653 + Psest_0343 0.82 +0.3
366,653 + Psest_0343 0.82 -1.8
366,653 + Psest_0343 0.82 -0.8
366,654 - Psest_0343 0.82 -1.6
366,654 - Psest_0343 0.82 +1.6
366,654 - Psest_0343 0.82 -0.3
366,654 - Psest_0343 0.82 +2.6
366,654 - Psest_0343 0.82 -0.3
366,654 - Psest_0343 0.82 +0.7
366,654 - Psest_0343 0.82 -0.8
366,654 - Psest_0343 0.82 +0.5
366,927 - -0.7
366,960 + +0.4
367,057 - +0.9
367,057 - -0.8
367,057 - -1.6
367,057 - +2.1
367,065 + -0.3
367,066 - -0.1
367,186 + +1.8
367,187 - -1.6
367,187 - +2.6
367,187 - -1.8
367,212 + +0.3
367,212 + +0.8
367,212 + -2.3
367,212 + -0.2
367,212 + -0.0
367,212 + -0.8
367,213 - -0.0
367,434 + Psest_0344 0.19 +1.0
367,890 - Psest_0344 0.52 -0.0
367,991 + Psest_0344 0.59 +1.0
367,991 + Psest_0344 0.59 +0.3
367,991 + Psest_0344 0.59 -2.5
367,992 - Psest_0344 0.59 +0.6
367,992 - Psest_0344 0.59 +1.4
367,992 - Psest_0344 0.59 -0.3
367,992 - Psest_0344 0.59 -2.1

Or see this region's nucleotide sequence