Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0288

Experiment: LB 30C timecourse2 timepoint 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0286 and Psest_0287 overlap by 4 nucleotidesPsest_0287 and Psest_0288 overlap by 1 nucleotidesPsest_0288 and Psest_0289 are separated by 133 nucleotidesPsest_0289 and Psest_0290 are separated by 67 nucleotides Psest_0286: Psest_0286 - pilus retraction protein PilT, at 301,434 to 302,579 _0286 Psest_0287: Psest_0287 - probable DNA metabolism protein, at 302,576 to 303,412 _0287 Psest_0288: Psest_0288 - putative DNA modification/repair radical SAM protein, at 303,412 to 304,623 _0288 Psest_0289: Psest_0289 - Predicted membrane protein, at 304,757 to 305,152 _0289 Psest_0290: Psest_0290 - dihydroorotase, multifunctional complex type, at 305,220 to 306,494 _0290 Position (kb) 303 304 305Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 302.427 kb on + strand, within Psest_0286at 302.427 kb on + strand, within Psest_0286at 302.428 kb on - strand, within Psest_0286at 302.428 kb on - strand, within Psest_0286at 302.428 kb on - strand, within Psest_0286at 302.428 kb on - strand, within Psest_0286at 302.428 kb on - strand, within Psest_0286at 302.784 kb on + strand, within Psest_0287at 302.784 kb on + strand, within Psest_0287at 302.784 kb on + strand, within Psest_0287at 302.785 kb on - strand, within Psest_0287at 302.787 kb on + strand, within Psest_0287at 302.787 kb on + strand, within Psest_0287at 302.787 kb on + strand, within Psest_0287at 302.787 kb on + strand, within Psest_0287at 302.787 kb on + strand, within Psest_0287at 302.787 kb on + strand, within Psest_0287at 302.787 kb on + strand, within Psest_0287at 302.787 kb on + strand, within Psest_0287at 302.788 kb on - strand, within Psest_0287at 302.788 kb on - strand, within Psest_0287at 302.788 kb on - strand, within Psest_0287at 302.788 kb on - strand, within Psest_0287at 302.788 kb on - strand, within Psest_0287at 302.788 kb on - strand, within Psest_0287at 302.788 kb on - strand, within Psest_0287at 302.788 kb on - strand, within Psest_0287at 302.799 kb on - strand, within Psest_0287at 302.865 kb on + strand, within Psest_0287at 302.865 kb on + strand, within Psest_0287at 302.865 kb on + strand, within Psest_0287at 302.865 kb on + strand, within Psest_0287at 302.865 kb on + strand, within Psest_0287at 302.865 kb on + strand, within Psest_0287at 302.866 kb on - strand, within Psest_0287at 302.866 kb on - strand, within Psest_0287at 302.866 kb on - strand, within Psest_0287at 302.866 kb on - strand, within Psest_0287at 302.868 kb on + strand, within Psest_0287at 302.868 kb on + strand, within Psest_0287at 302.868 kb on + strand, within Psest_0287at 302.868 kb on + strand, within Psest_0287at 302.868 kb on + strand, within Psest_0287at 302.868 kb on + strand, within Psest_0287at 302.868 kb on + strand, within Psest_0287at 302.868 kb on + strand, within Psest_0287at 302.868 kb on + strand, within Psest_0287at 302.868 kb on + strand, within Psest_0287at 302.868 kb on + strand, within Psest_0287at 302.869 kb on - strand, within Psest_0287at 302.869 kb on - strand, within Psest_0287at 302.869 kb on - strand, within Psest_0287at 302.869 kb on - strand, within Psest_0287at 302.869 kb on - strand, within Psest_0287at 302.869 kb on - strand, within Psest_0287at 302.869 kb on - strand, within Psest_0287at 302.869 kb on - strand, within Psest_0287at 302.869 kb on - strand, within Psest_0287at 302.869 kb on - strand, within Psest_0287at 302.869 kb on - strand, within Psest_0287at 302.869 kb on - strand, within Psest_0287at 302.869 kb on - strand, within Psest_0287at 302.869 kb on - strand, within Psest_0287at 302.969 kb on + strand, within Psest_0287at 302.969 kb on + strand, within Psest_0287at 302.969 kb on + strand, within Psest_0287at 302.969 kb on + strand, within Psest_0287at 302.970 kb on - strand, within Psest_0287at 302.970 kb on - strand, within Psest_0287at 303.092 kb on + strand, within Psest_0287at 303.092 kb on + strand, within Psest_0287at 303.092 kb on + strand, within Psest_0287at 303.092 kb on + strand, within Psest_0287at 303.092 kb on + strand, within Psest_0287at 303.093 kb on - strand, within Psest_0287at 303.093 kb on - strand, within Psest_0287at 303.093 kb on - strand, within Psest_0287at 303.093 kb on - strand, within Psest_0287at 303.542 kb on - strand, within Psest_0288at 303.542 kb on - strand, within Psest_0288at 303.777 kb on + strand, within Psest_0288at 303.795 kb on - strand, within Psest_0288at 303.875 kb on + strand, within Psest_0288at 303.875 kb on + strand, within Psest_0288at 303.875 kb on + strand, within Psest_0288at 303.876 kb on - strand, within Psest_0288at 303.876 kb on - strand, within Psest_0288at 303.878 kb on + strand, within Psest_0288at 303.878 kb on + strand, within Psest_0288at 303.878 kb on + strand, within Psest_0288at 303.879 kb on - strand, within Psest_0288at 303.879 kb on - strand, within Psest_0288at 303.896 kb on + strand, within Psest_0288at 303.897 kb on - strand, within Psest_0288at 304.205 kb on + strand, within Psest_0288at 304.205 kb on + strand, within Psest_0288at 304.205 kb on + strand, within Psest_0288at 304.206 kb on - strand, within Psest_0288at 304.206 kb on - strand, within Psest_0288at 304.268 kb on + strand, within Psest_0288at 304.269 kb on - strand, within Psest_0288at 304.269 kb on - strand, within Psest_0288at 304.410 kb on - strand, within Psest_0288at 304.421 kb on + strand, within Psest_0288at 304.422 kb on - strand, within Psest_0288at 304.422 kb on - strand, within Psest_0288at 304.577 kb on + strandat 304.577 kb on + strandat 304.577 kb on + strandat 304.577 kb on + strandat 304.578 kb on - strandat 304.639 kb on - strandat 304.639 kb on - strandat 304.639 kb on - strandat 304.639 kb on - strandat 304.651 kb on + strandat 304.651 kb on + strandat 304.652 kb on - strandat 304.652 kb on - strandat 304.657 kb on - strandat 304.657 kb on - strandat 304.774 kb on + strandat 304.774 kb on + strandat 304.775 kb on - strandat 304.791 kb on - strandat 304.832 kb on + strand, within Psest_0289at 304.832 kb on + strand, within Psest_0289at 304.832 kb on + strand, within Psest_0289at 304.833 kb on - strand, within Psest_0289at 304.835 kb on + strand, within Psest_0289at 304.970 kb on + strand, within Psest_0289at 304.971 kb on - strand, within Psest_0289at 304.987 kb on - strand, within Psest_0289at 305.017 kb on - strand, within Psest_0289at 305.017 kb on - strand, within Psest_0289at 305.027 kb on + strand, within Psest_0289at 305.027 kb on + strand, within Psest_0289at 305.027 kb on + strand, within Psest_0289at 305.027 kb on + strand, within Psest_0289at 305.027 kb on + strand, within Psest_0289at 305.027 kb on + strand, within Psest_0289at 305.027 kb on + strand, within Psest_0289at 305.027 kb on + strand, within Psest_0289at 305.027 kb on + strand, within Psest_0289at 305.027 kb on + strand, within Psest_0289at 305.028 kb on - strand, within Psest_0289at 305.028 kb on - strand, within Psest_0289at 305.028 kb on - strand, within Psest_0289at 305.057 kb on + strand, within Psest_0289at 305.097 kb on - strand, within Psest_0289at 305.188 kb on + strandat 305.188 kb on + strandat 305.189 kb on - strandat 305.189 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 30C timecourse2 timepoint 2
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302,427 + Psest_0286 0.87 +0.6
302,427 + Psest_0286 0.87 -0.1
302,428 - Psest_0286 0.87 +0.5
302,428 - Psest_0286 0.87 +3.1
302,428 - Psest_0286 0.87 -0.4
302,428 - Psest_0286 0.87 -0.1
302,428 - Psest_0286 0.87 +0.5
302,784 + Psest_0287 0.25 -0.9
302,784 + Psest_0287 0.25 +0.4
302,784 + Psest_0287 0.25 -0.0
302,785 - Psest_0287 0.25 +0.6
302,787 + Psest_0287 0.25 -1.6
302,787 + Psest_0287 0.25 -0.4
302,787 + Psest_0287 0.25 +0.3
302,787 + Psest_0287 0.25 -1.4
302,787 + Psest_0287 0.25 +1.4
302,787 + Psest_0287 0.25 -0.2
302,787 + Psest_0287 0.25 -0.0
302,787 + Psest_0287 0.25 +1.1
302,788 - Psest_0287 0.25 -0.3
302,788 - Psest_0287 0.25 -2.0
302,788 - Psest_0287 0.25 -0.3
302,788 - Psest_0287 0.25 -0.9
302,788 - Psest_0287 0.25 +1.3
302,788 - Psest_0287 0.25 -1.4
302,788 - Psest_0287 0.25 -0.4
302,788 - Psest_0287 0.25 +1.3
302,799 - Psest_0287 0.27 -0.6
302,865 + Psest_0287 0.35 -1.6
302,865 + Psest_0287 0.35 -2.8
302,865 + Psest_0287 0.35 -2.0
302,865 + Psest_0287 0.35 +1.8
302,865 + Psest_0287 0.35 +1.2
302,865 + Psest_0287 0.35 -0.3
302,866 - Psest_0287 0.35 -1.1
302,866 - Psest_0287 0.35 +1.4
302,866 - Psest_0287 0.35 -0.2
302,866 - Psest_0287 0.35 +1.8
302,868 + Psest_0287 0.35 -1.0
302,868 + Psest_0287 0.35 -1.2
302,868 + Psest_0287 0.35 -0.4
302,868 + Psest_0287 0.35 -0.0
302,868 + Psest_0287 0.35 -0.8
302,868 + Psest_0287 0.35 +0.3
302,868 + Psest_0287 0.35 -0.3
302,868 + Psest_0287 0.35 +0.8
302,868 + Psest_0287 0.35 -0.2
302,868 + Psest_0287 0.35 +0.6
302,868 + Psest_0287 0.35 +0.4
302,869 - Psest_0287 0.35 -0.8
302,869 - Psest_0287 0.35 +0.3
302,869 - Psest_0287 0.35 +0.6
302,869 - Psest_0287 0.35 -0.6
302,869 - Psest_0287 0.35 +0.7
302,869 - Psest_0287 0.35 -0.0
302,869 - Psest_0287 0.35 -0.4
302,869 - Psest_0287 0.35 -1.3
302,869 - Psest_0287 0.35 +0.8
302,869 - Psest_0287 0.35 -0.3
302,869 - Psest_0287 0.35 -0.5
302,869 - Psest_0287 0.35 -1.9
302,869 - Psest_0287 0.35 +0.6
302,869 - Psest_0287 0.35 +1.1
302,969 + Psest_0287 0.47 +0.6
302,969 + Psest_0287 0.47 -0.8
302,969 + Psest_0287 0.47 +0.1
302,969 + Psest_0287 0.47 -0.9
302,970 - Psest_0287 0.47 +0.2
302,970 - Psest_0287 0.47 -0.4
303,092 + Psest_0287 0.62 +1.7
303,092 + Psest_0287 0.62 -1.8
303,092 + Psest_0287 0.62 +1.6
303,092 + Psest_0287 0.62 -0.6
303,092 + Psest_0287 0.62 -0.3
303,093 - Psest_0287 0.62 -0.9
303,093 - Psest_0287 0.62 +1.2
303,093 - Psest_0287 0.62 +0.4
303,093 - Psest_0287 0.62 -0.3
303,542 - Psest_0288 0.11 +0.2
303,542 - Psest_0288 0.11 +1.6
303,777 + Psest_0288 0.30 -1.6
303,795 - Psest_0288 0.32 -2.0
303,875 + Psest_0288 0.38 -1.0
303,875 + Psest_0288 0.38 +0.2
303,875 + Psest_0288 0.38 +0.0
303,876 - Psest_0288 0.38 +0.1
303,876 - Psest_0288 0.38 -1.1
303,878 + Psest_0288 0.38 -0.8
303,878 + Psest_0288 0.38 -1.1
303,878 + Psest_0288 0.38 -0.2
303,879 - Psest_0288 0.39 -0.2
303,879 - Psest_0288 0.39 -1.8
303,896 + Psest_0288 0.40 -2.8
303,897 - Psest_0288 0.40 -1.6
304,205 + Psest_0288 0.65 -0.6
304,205 + Psest_0288 0.65 +0.6
304,205 + Psest_0288 0.65 -1.1
304,206 - Psest_0288 0.66 -0.6
304,206 - Psest_0288 0.66 +1.6
304,268 + Psest_0288 0.71 +0.2
304,269 - Psest_0288 0.71 -2.4
304,269 - Psest_0288 0.71 +0.6
304,410 - Psest_0288 0.82 -0.8
304,421 + Psest_0288 0.83 -2.5
304,422 - Psest_0288 0.83 -2.8
304,422 - Psest_0288 0.83 +1.0
304,577 + +1.0
304,577 + -0.7
304,577 + +1.3
304,577 + -0.4
304,578 - +0.7
304,639 - -0.0
304,639 - -0.8
304,639 - +1.1
304,639 - +0.8
304,651 + -0.4
304,651 + +0.1
304,652 - -1.9
304,652 - +0.9
304,657 - -0.4
304,657 - -0.7
304,774 + -1.0
304,774 + +2.9
304,775 - +0.8
304,791 - -0.5
304,832 + Psest_0289 0.19 -1.2
304,832 + Psest_0289 0.19 +0.3
304,832 + Psest_0289 0.19 +2.6
304,833 - Psest_0289 0.19 +0.1
304,835 + Psest_0289 0.20 +0.6
304,970 + Psest_0289 0.54 -0.6
304,971 - Psest_0289 0.54 +1.4
304,987 - Psest_0289 0.58 +2.0
305,017 - Psest_0289 0.66 +0.6
305,017 - Psest_0289 0.66 +1.6
305,027 + Psest_0289 0.68 +0.6
305,027 + Psest_0289 0.68 +0.6
305,027 + Psest_0289 0.68 -0.0
305,027 + Psest_0289 0.68 +2.1
305,027 + Psest_0289 0.68 +0.6
305,027 + Psest_0289 0.68 -0.4
305,027 + Psest_0289 0.68 -0.4
305,027 + Psest_0289 0.68 -0.0
305,027 + Psest_0289 0.68 -0.2
305,027 + Psest_0289 0.68 +0.4
305,028 - Psest_0289 0.68 +0.2
305,028 - Psest_0289 0.68 -2.3
305,028 - Psest_0289 0.68 -0.0
305,057 + Psest_0289 0.76 +0.6
305,097 - Psest_0289 0.86 -0.0
305,188 + -0.4
305,188 + -0.2
305,189 - -0.8
305,189 - -1.2

Or see this region's nucleotide sequence