Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0242

Experiment: LB 30C timecourse2 timepoint 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0241 and Psest_0242 overlap by 17 nucleotidesPsest_0242 and Psest_0243 overlap by 1 nucleotidesPsest_0243 and Psest_0244 are separated by 107 nucleotidesPsest_0244 and Psest_0245 are separated by 105 nucleotides Psest_0241: Psest_0241 - Na+/phosphate symporter, at 251,058 to 252,896 _0241 Psest_0242: Psest_0242 - gamma-glutamyltranspeptidase, at 252,880 to 254,613 _0242 Psest_0243: Psest_0243 - hypothetical protein, at 254,613 to 254,864 _0243 Psest_0244: Psest_0244 - pantetheine-phosphate adenylyltransferase, bacterial, at 254,972 to 255,454 _0244 Psest_0245: Psest_0245 - Choline dehydrogenase and related flavoproteins, at 255,560 to 257,155 _0245 Position (kb) 252 253 254 255Strain fitness (log2 ratio) -2 -1 0 1 2 3at 252.150 kb on + strand, within Psest_0241at 252.258 kb on + strand, within Psest_0241at 252.258 kb on + strand, within Psest_0241at 252.258 kb on + strand, within Psest_0241at 252.258 kb on + strand, within Psest_0241at 252.258 kb on + strand, within Psest_0241at 252.258 kb on + strand, within Psest_0241at 252.258 kb on + strand, within Psest_0241at 252.258 kb on + strand, within Psest_0241at 252.259 kb on - strand, within Psest_0241at 252.259 kb on - strand, within Psest_0241at 252.259 kb on - strand, within Psest_0241at 252.259 kb on - strand, within Psest_0241at 252.259 kb on - strand, within Psest_0241at 252.259 kb on - strand, within Psest_0241at 252.259 kb on - strand, within Psest_0241at 252.365 kb on + strand, within Psest_0241at 252.365 kb on + strand, within Psest_0241at 252.365 kb on + strand, within Psest_0241at 252.365 kb on + strand, within Psest_0241at 252.365 kb on + strand, within Psest_0241at 252.365 kb on + strand, within Psest_0241at 252.378 kb on + strand, within Psest_0241at 252.378 kb on + strand, within Psest_0241at 252.525 kb on + strand, within Psest_0241at 252.526 kb on - strand, within Psest_0241at 252.526 kb on - strand, within Psest_0241at 252.561 kb on + strand, within Psest_0241at 252.561 kb on + strand, within Psest_0241at 252.561 kb on + strand, within Psest_0241at 252.561 kb on + strand, within Psest_0241at 252.561 kb on + strand, within Psest_0241at 252.561 kb on + strand, within Psest_0241at 252.561 kb on + strand, within Psest_0241at 252.562 kb on - strand, within Psest_0241at 252.562 kb on - strand, within Psest_0241at 252.562 kb on - strand, within Psest_0241at 252.562 kb on - strand, within Psest_0241at 252.562 kb on - strand, within Psest_0241at 252.562 kb on - strand, within Psest_0241at 252.562 kb on - strand, within Psest_0241at 252.562 kb on - strand, within Psest_0241at 252.562 kb on - strand, within Psest_0241at 252.788 kb on + strandat 252.788 kb on + strandat 252.789 kb on - strandat 252.894 kb on + strandat 252.986 kb on + strandat 253.088 kb on + strand, within Psest_0242at 253.089 kb on - strand, within Psest_0242at 253.089 kb on - strand, within Psest_0242at 253.089 kb on - strand, within Psest_0242at 253.096 kb on + strand, within Psest_0242at 253.096 kb on + strand, within Psest_0242at 253.097 kb on - strand, within Psest_0242at 253.097 kb on - strand, within Psest_0242at 253.097 kb on - strand, within Psest_0242at 253.097 kb on - strand, within Psest_0242at 253.109 kb on + strand, within Psest_0242at 253.109 kb on + strand, within Psest_0242at 253.110 kb on - strand, within Psest_0242at 253.166 kb on + strand, within Psest_0242at 253.326 kb on - strand, within Psest_0242at 253.482 kb on + strand, within Psest_0242at 253.483 kb on - strand, within Psest_0242at 253.577 kb on + strand, within Psest_0242at 253.838 kb on + strand, within Psest_0242at 253.838 kb on + strand, within Psest_0242at 253.891 kb on + strand, within Psest_0242at 253.891 kb on + strand, within Psest_0242at 253.891 kb on + strand, within Psest_0242at 253.891 kb on + strand, within Psest_0242at 253.892 kb on - strand, within Psest_0242at 253.892 kb on - strand, within Psest_0242at 253.892 kb on - strand, within Psest_0242at 254.264 kb on + strand, within Psest_0242at 254.264 kb on + strand, within Psest_0242at 254.264 kb on + strand, within Psest_0242at 254.264 kb on + strand, within Psest_0242at 254.264 kb on + strand, within Psest_0242at 254.264 kb on + strand, within Psest_0242at 254.264 kb on + strand, within Psest_0242at 254.264 kb on + strand, within Psest_0242at 254.265 kb on - strand, within Psest_0242at 254.265 kb on - strand, within Psest_0242at 254.265 kb on - strand, within Psest_0242at 254.265 kb on - strand, within Psest_0242at 254.265 kb on - strand, within Psest_0242at 254.265 kb on - strand, within Psest_0242at 254.265 kb on - strand, within Psest_0242at 254.265 kb on - strand, within Psest_0242at 254.265 kb on - strand, within Psest_0242at 254.265 kb on - strand, within Psest_0242at 254.638 kb on + strandat 254.638 kb on + strandat 254.639 kb on - strand, within Psest_0243at 254.639 kb on - strand, within Psest_0243at 254.906 kb on - strandat 254.906 kb on - strandat 254.909 kb on - strandat 254.909 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB 30C timecourse2 timepoint 2
remove
252,150 + Psest_0241 0.59 +0.5
252,258 + Psest_0241 0.65 -0.5
252,258 + Psest_0241 0.65 -0.5
252,258 + Psest_0241 0.65 -0.7
252,258 + Psest_0241 0.65 +0.3
252,258 + Psest_0241 0.65 -1.3
252,258 + Psest_0241 0.65 -0.8
252,258 + Psest_0241 0.65 +3.1
252,258 + Psest_0241 0.65 -0.5
252,259 - Psest_0241 0.65 -1.8
252,259 - Psest_0241 0.65 +0.8
252,259 - Psest_0241 0.65 -0.0
252,259 - Psest_0241 0.65 -0.9
252,259 - Psest_0241 0.65 +0.4
252,259 - Psest_0241 0.65 -0.6
252,259 - Psest_0241 0.65 -1.6
252,365 + Psest_0241 0.71 -0.6
252,365 + Psest_0241 0.71 +0.8
252,365 + Psest_0241 0.71 -1.0
252,365 + Psest_0241 0.71 -1.6
252,365 + Psest_0241 0.71 +1.1
252,365 + Psest_0241 0.71 +0.1
252,378 + Psest_0241 0.72 -1.5
252,378 + Psest_0241 0.72 +2.2
252,525 + Psest_0241 0.80 -1.6
252,526 - Psest_0241 0.80 -0.8
252,526 - Psest_0241 0.80 +0.2
252,561 + Psest_0241 0.82 +0.7
252,561 + Psest_0241 0.82 +0.8
252,561 + Psest_0241 0.82 +0.8
252,561 + Psest_0241 0.82 -0.0
252,561 + Psest_0241 0.82 -0.0
252,561 + Psest_0241 0.82 -1.0
252,561 + Psest_0241 0.82 -0.5
252,562 - Psest_0241 0.82 +0.2
252,562 - Psest_0241 0.82 -1.3
252,562 - Psest_0241 0.82 -0.0
252,562 - Psest_0241 0.82 -1.7
252,562 - Psest_0241 0.82 -0.0
252,562 - Psest_0241 0.82 -1.0
252,562 - Psest_0241 0.82 +0.5
252,562 - Psest_0241 0.82 +2.1
252,562 - Psest_0241 0.82 -1.8
252,788 + -1.8
252,788 + -0.6
252,789 - -2.3
252,894 + +0.5
252,986 + -1.3
253,088 + Psest_0242 0.12 -0.5
253,089 - Psest_0242 0.12 +2.5
253,089 - Psest_0242 0.12 +0.0
253,089 - Psest_0242 0.12 +2.6
253,096 + Psest_0242 0.12 +0.5
253,096 + Psest_0242 0.12 +2.5
253,097 - Psest_0242 0.13 -0.8
253,097 - Psest_0242 0.13 -0.0
253,097 - Psest_0242 0.13 -0.5
253,097 - Psest_0242 0.13 -0.5
253,109 + Psest_0242 0.13 +0.5
253,109 + Psest_0242 0.13 +0.1
253,110 - Psest_0242 0.13 -0.1
253,166 + Psest_0242 0.16 +0.8
253,326 - Psest_0242 0.26 -0.0
253,482 + Psest_0242 0.35 -0.0
253,483 - Psest_0242 0.35 +1.4
253,577 + Psest_0242 0.40 -0.0
253,838 + Psest_0242 0.55 +1.5
253,838 + Psest_0242 0.55 +1.5
253,891 + Psest_0242 0.58 +0.5
253,891 + Psest_0242 0.58 +2.5
253,891 + Psest_0242 0.58 +1.5
253,891 + Psest_0242 0.58 -1.3
253,892 - Psest_0242 0.58 +2.0
253,892 - Psest_0242 0.58 +1.5
253,892 - Psest_0242 0.58 +1.5
254,264 + Psest_0242 0.80 -1.0
254,264 + Psest_0242 0.80 +1.1
254,264 + Psest_0242 0.80 -0.0
254,264 + Psest_0242 0.80 -0.8
254,264 + Psest_0242 0.80 -0.8
254,264 + Psest_0242 0.80 -0.6
254,264 + Psest_0242 0.80 -2.3
254,264 + Psest_0242 0.80 +1.5
254,265 - Psest_0242 0.80 +1.5
254,265 - Psest_0242 0.80 +1.5
254,265 - Psest_0242 0.80 -0.0
254,265 - Psest_0242 0.80 +0.2
254,265 - Psest_0242 0.80 +0.5
254,265 - Psest_0242 0.80 +0.5
254,265 - Psest_0242 0.80 +1.5
254,265 - Psest_0242 0.80 -0.0
254,265 - Psest_0242 0.80 +1.8
254,265 - Psest_0242 0.80 +1.0
254,638 + -1.6
254,638 + +0.5
254,639 - Psest_0243 0.10 +1.2
254,639 - Psest_0243 0.10 +0.5
254,906 - +0.3
254,906 - +0.3
254,909 - +1.9
254,909 - +1.0

Or see this region's nucleotide sequence