Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0209

Experiment: LB 30C timecourse2 timepoint 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0208 and Psest_0209 are separated by 1 nucleotidesPsest_0209 and Psest_0210 overlap by 4 nucleotides Psest_0208: Psest_0208 - Uncharacterized protein conserved in bacteria, at 207,839 to 209,353 _0208 Psest_0209: Psest_0209 - membrane protein AbrB duplication, at 209,355 to 210,383 _0209 Psest_0210: Psest_0210 - Na/Pi-cotransporter, at 210,380 to 212,065 _0210 Position (kb) 209 210 211Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 208.416 kb on - strand, within Psest_0208at 208.679 kb on + strand, within Psest_0208at 208.679 kb on + strand, within Psest_0208at 208.679 kb on + strand, within Psest_0208at 208.679 kb on + strand, within Psest_0208at 208.679 kb on + strand, within Psest_0208at 208.679 kb on + strand, within Psest_0208at 208.679 kb on + strand, within Psest_0208at 208.679 kb on + strand, within Psest_0208at 208.679 kb on + strand, within Psest_0208at 208.679 kb on + strand, within Psest_0208at 208.679 kb on + strand, within Psest_0208at 208.680 kb on - strand, within Psest_0208at 208.680 kb on - strand, within Psest_0208at 208.680 kb on - strand, within Psest_0208at 208.680 kb on - strand, within Psest_0208at 208.680 kb on - strand, within Psest_0208at 208.859 kb on + strand, within Psest_0208at 208.859 kb on + strand, within Psest_0208at 208.860 kb on - strand, within Psest_0208at 208.860 kb on - strand, within Psest_0208at 208.860 kb on - strand, within Psest_0208at 208.860 kb on - strand, within Psest_0208at 209.054 kb on + strand, within Psest_0208at 209.055 kb on - strand, within Psest_0208at 209.114 kb on + strand, within Psest_0208at 209.238 kb on - strandat 209.238 kb on - strandat 209.309 kb on + strandat 209.509 kb on + strand, within Psest_0209at 209.899 kb on + strand, within Psest_0209at 210.569 kb on + strand, within Psest_0210at 210.569 kb on + strand, within Psest_0210at 210.695 kb on + strand, within Psest_0210at 210.695 kb on + strand, within Psest_0210at 210.696 kb on - strand, within Psest_0210at 210.696 kb on - strand, within Psest_0210at 210.833 kb on + strand, within Psest_0210at 210.833 kb on + strand, within Psest_0210at 210.833 kb on + strand, within Psest_0210at 210.833 kb on + strand, within Psest_0210at 210.833 kb on + strand, within Psest_0210at 210.833 kb on + strand, within Psest_0210at 210.834 kb on - strand, within Psest_0210at 210.834 kb on - strand, within Psest_0210at 210.834 kb on - strand, within Psest_0210at 210.834 kb on - strand, within Psest_0210at 210.915 kb on + strand, within Psest_0210at 210.915 kb on + strand, within Psest_0210at 210.933 kb on + strand, within Psest_0210at 210.933 kb on + strand, within Psest_0210at 210.934 kb on - strand, within Psest_0210at 210.934 kb on - strand, within Psest_0210at 211.010 kb on + strand, within Psest_0210at 211.036 kb on + strand, within Psest_0210at 211.161 kb on + strand, within Psest_0210at 211.161 kb on + strand, within Psest_0210at 211.161 kb on + strand, within Psest_0210at 211.161 kb on + strand, within Psest_0210at 211.162 kb on - strand, within Psest_0210at 211.162 kb on - strand, within Psest_0210at 211.224 kb on + strand, within Psest_0210at 211.224 kb on + strand, within Psest_0210at 211.224 kb on + strand, within Psest_0210at 211.225 kb on - strand, within Psest_0210at 211.332 kb on + strand, within Psest_0210at 211.332 kb on + strand, within Psest_0210at 211.333 kb on - strand, within Psest_0210at 211.333 kb on - strand, within Psest_0210at 211.333 kb on - strand, within Psest_0210at 211.333 kb on - strand, within Psest_0210at 211.333 kb on - strand, within Psest_0210at 211.333 kb on - strand, within Psest_0210at 211.333 kb on - strand, within Psest_0210

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 30C timecourse2 timepoint 2
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208,416 - Psest_0208 0.38 +0.4
208,679 + Psest_0208 0.55 -0.8
208,679 + Psest_0208 0.55 -1.8
208,679 + Psest_0208 0.55 +0.5
208,679 + Psest_0208 0.55 +2.0
208,679 + Psest_0208 0.55 +0.2
208,679 + Psest_0208 0.55 +1.5
208,679 + Psest_0208 0.55 +0.7
208,679 + Psest_0208 0.55 -0.5
208,679 + Psest_0208 0.55 +0.3
208,679 + Psest_0208 0.55 +0.6
208,679 + Psest_0208 0.55 +1.5
208,680 - Psest_0208 0.56 -2.2
208,680 - Psest_0208 0.56 +0.1
208,680 - Psest_0208 0.56 +0.5
208,680 - Psest_0208 0.56 +0.1
208,680 - Psest_0208 0.56 -0.4
208,859 + Psest_0208 0.67 +1.1
208,859 + Psest_0208 0.67 -0.0
208,860 - Psest_0208 0.67 +0.0
208,860 - Psest_0208 0.67 -1.0
208,860 - Psest_0208 0.67 -1.5
208,860 - Psest_0208 0.67 -1.5
209,054 + Psest_0208 0.80 +0.5
209,055 - Psest_0208 0.80 +0.8
209,114 + Psest_0208 0.84 -1.5
209,238 - +0.3
209,238 - +0.2
209,309 + +2.0
209,509 + Psest_0209 0.15 -0.5
209,899 + Psest_0209 0.53 -0.0
210,569 + Psest_0210 0.11 +1.5
210,569 + Psest_0210 0.11 +0.5
210,695 + Psest_0210 0.19 -0.0
210,695 + Psest_0210 0.19 -0.0
210,696 - Psest_0210 0.19 -1.8
210,696 - Psest_0210 0.19 +4.1
210,833 + Psest_0210 0.27 -1.0
210,833 + Psest_0210 0.27 -0.0
210,833 + Psest_0210 0.27 -1.8
210,833 + Psest_0210 0.27 +2.4
210,833 + Psest_0210 0.27 +1.1
210,833 + Psest_0210 0.27 +0.5
210,834 - Psest_0210 0.27 -2.7
210,834 - Psest_0210 0.27 +1.5
210,834 - Psest_0210 0.27 +0.5
210,834 - Psest_0210 0.27 +0.9
210,915 + Psest_0210 0.32 -0.0
210,915 + Psest_0210 0.32 +0.5
210,933 + Psest_0210 0.33 -1.5
210,933 + Psest_0210 0.33 -0.0
210,934 - Psest_0210 0.33 -0.6
210,934 - Psest_0210 0.33 +2.1
211,010 + Psest_0210 0.37 -0.8
211,036 + Psest_0210 0.39 +1.5
211,161 + Psest_0210 0.46 -0.0
211,161 + Psest_0210 0.46 +1.5
211,161 + Psest_0210 0.46 -1.6
211,161 + Psest_0210 0.46 +1.1
211,162 - Psest_0210 0.46 +1.5
211,162 - Psest_0210 0.46 +0.5
211,224 + Psest_0210 0.50 -0.0
211,224 + Psest_0210 0.50 +1.5
211,224 + Psest_0210 0.50 -1.8
211,225 - Psest_0210 0.50 +1.0
211,332 + Psest_0210 0.56 +2.1
211,332 + Psest_0210 0.56 +3.9
211,333 - Psest_0210 0.57 -0.5
211,333 - Psest_0210 0.57 -1.8
211,333 - Psest_0210 0.57 +1.9
211,333 - Psest_0210 0.57 +1.0
211,333 - Psest_0210 0.57 -0.8
211,333 - Psest_0210 0.57 -1.4
211,333 - Psest_0210 0.57 +0.3

Or see this region's nucleotide sequence