Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0205

Experiment: LB 30C timecourse2 timepoint 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0203 and Psest_0204 overlap by 8 nucleotidesPsest_0204 and Psest_0205 are separated by 182 nucleotidesPsest_0205 and Psest_0206 are separated by 27 nucleotides Psest_0203: Psest_0203 - Signal transduction histidine kinase, at 202,804 to 204,204 _0203 Psest_0204: Psest_0204 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 204,197 to 204,868 _0204 Psest_0205: Psest_0205 - tricarboxylate porin (from data), at 205,051 to 206,313 _0205 Psest_0206: Psest_0206 - Uncharacterized protein conserved in bacteria, at 206,341 to 207,315 _0206 Position (kb) 205 206 207Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 204.059 kb on - strand, within Psest_0203at 204.223 kb on - strandat 204.242 kb on - strandat 204.291 kb on + strand, within Psest_0204at 204.291 kb on + strand, within Psest_0204at 204.291 kb on + strand, within Psest_0204at 204.291 kb on + strand, within Psest_0204at 204.291 kb on + strand, within Psest_0204at 204.291 kb on + strand, within Psest_0204at 204.291 kb on + strand, within Psest_0204at 204.291 kb on + strand, within Psest_0204at 204.292 kb on - strand, within Psest_0204at 204.292 kb on - strand, within Psest_0204at 204.292 kb on - strand, within Psest_0204at 204.292 kb on - strand, within Psest_0204at 204.292 kb on - strand, within Psest_0204at 204.292 kb on - strand, within Psest_0204at 204.292 kb on - strand, within Psest_0204at 204.292 kb on - strand, within Psest_0204at 204.292 kb on - strand, within Psest_0204at 204.292 kb on - strand, within Psest_0204at 204.336 kb on - strand, within Psest_0204at 204.468 kb on + strand, within Psest_0204at 204.468 kb on + strand, within Psest_0204at 204.469 kb on - strand, within Psest_0204at 204.469 kb on - strand, within Psest_0204at 204.469 kb on - strand, within Psest_0204at 204.577 kb on - strand, within Psest_0204at 204.736 kb on - strand, within Psest_0204at 204.970 kb on + strandat 204.970 kb on + strandat 205.036 kb on - strandat 205.183 kb on + strand, within Psest_0205at 205.183 kb on + strand, within Psest_0205at 205.183 kb on + strand, within Psest_0205at 205.184 kb on - strand, within Psest_0205at 205.184 kb on - strand, within Psest_0205at 205.696 kb on + strand, within Psest_0205at 205.696 kb on + strand, within Psest_0205at 205.697 kb on - strand, within Psest_0205at 205.697 kb on - strand, within Psest_0205at 205.729 kb on + strand, within Psest_0205at 205.729 kb on + strand, within Psest_0205at 205.730 kb on - strand, within Psest_0205at 205.730 kb on - strand, within Psest_0205at 205.733 kb on - strand, within Psest_0205at 205.964 kb on - strand, within Psest_0205at 205.969 kb on + strand, within Psest_0205at 205.969 kb on + strand, within Psest_0205at 205.969 kb on + strand, within Psest_0205at 205.969 kb on + strand, within Psest_0205at 205.969 kb on + strand, within Psest_0205at 205.969 kb on + strand, within Psest_0205at 205.969 kb on + strand, within Psest_0205at 205.969 kb on + strand, within Psest_0205at 205.969 kb on + strand, within Psest_0205at 205.969 kb on + strand, within Psest_0205at 205.969 kb on + strand, within Psest_0205at 205.970 kb on - strand, within Psest_0205at 205.970 kb on - strand, within Psest_0205at 205.970 kb on - strand, within Psest_0205at 205.970 kb on - strand, within Psest_0205at 205.970 kb on - strand, within Psest_0205at 205.970 kb on - strand, within Psest_0205at 205.970 kb on - strand, within Psest_0205at 205.970 kb on - strand, within Psest_0205at 205.970 kb on - strand, within Psest_0205at 205.970 kb on - strand, within Psest_0205at 205.970 kb on - strand, within Psest_0205at 205.970 kb on - strand, within Psest_0205at 205.970 kb on - strand, within Psest_0205at 206.110 kb on + strand, within Psest_0205at 206.134 kb on + strand, within Psest_0205at 206.134 kb on + strand, within Psest_0205at 206.134 kb on + strand, within Psest_0205at 206.135 kb on - strand, within Psest_0205at 206.135 kb on - strand, within Psest_0205at 206.135 kb on - strand, within Psest_0205at 206.135 kb on - strand, within Psest_0205at 206.185 kb on + strand, within Psest_0205at 206.185 kb on + strand, within Psest_0205at 206.186 kb on - strand, within Psest_0205at 206.186 kb on - strand, within Psest_0205at 206.186 kb on - strand, within Psest_0205at 206.186 kb on - strand, within Psest_0205at 206.293 kb on + strandat 206.294 kb on - strandat 206.294 kb on - strandat 206.294 kb on - strandat 206.294 kb on - strandat 206.533 kb on + strand, within Psest_0206at 206.533 kb on + strand, within Psest_0206at 206.533 kb on + strand, within Psest_0206at 206.533 kb on + strand, within Psest_0206at 206.533 kb on + strand, within Psest_0206at 206.533 kb on + strand, within Psest_0206at 206.533 kb on + strand, within Psest_0206at 206.533 kb on + strand, within Psest_0206at 206.533 kb on + strand, within Psest_0206at 206.533 kb on + strand, within Psest_0206at 206.534 kb on - strand, within Psest_0206at 206.534 kb on - strand, within Psest_0206at 206.534 kb on - strand, within Psest_0206at 206.534 kb on - strand, within Psest_0206at 206.534 kb on - strand, within Psest_0206at 206.534 kb on - strand, within Psest_0206at 206.534 kb on - strand, within Psest_0206at 206.563 kb on + strand, within Psest_0206at 206.563 kb on + strand, within Psest_0206at 206.662 kb on + strand, within Psest_0206at 206.662 kb on + strand, within Psest_0206at 206.708 kb on - strand, within Psest_0206at 206.888 kb on - strand, within Psest_0206at 207.077 kb on - strand, within Psest_0206at 207.109 kb on + strand, within Psest_0206at 207.109 kb on + strand, within Psest_0206at 207.109 kb on + strand, within Psest_0206at 207.109 kb on + strand, within Psest_0206at 207.109 kb on + strand, within Psest_0206at 207.109 kb on + strand, within Psest_0206at 207.109 kb on + strand, within Psest_0206at 207.109 kb on + strand, within Psest_0206at 207.109 kb on + strand, within Psest_0206at 207.109 kb on + strand, within Psest_0206at 207.109 kb on + strand, within Psest_0206at 207.109 kb on + strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.110 kb on - strand, within Psest_0206at 207.277 kb on + strandat 207.277 kb on + strandat 207.277 kb on + strandat 207.277 kb on + strandat 207.277 kb on + strandat 207.277 kb on + strandat 207.278 kb on - strandat 207.278 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 30C timecourse2 timepoint 2
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204,059 - Psest_0203 0.90 +0.5
204,223 - +1.5
204,242 - +2.9
204,291 + Psest_0204 0.14 +1.5
204,291 + Psest_0204 0.14 +2.5
204,291 + Psest_0204 0.14 +0.5
204,291 + Psest_0204 0.14 +0.7
204,291 + Psest_0204 0.14 -0.0
204,291 + Psest_0204 0.14 +1.5
204,291 + Psest_0204 0.14 +2.3
204,291 + Psest_0204 0.14 +1.5
204,292 - Psest_0204 0.14 +1.5
204,292 - Psest_0204 0.14 +1.5
204,292 - Psest_0204 0.14 -0.6
204,292 - Psest_0204 0.14 -0.0
204,292 - Psest_0204 0.14 +0.9
204,292 - Psest_0204 0.14 +2.3
204,292 - Psest_0204 0.14 +0.5
204,292 - Psest_0204 0.14 -1.5
204,292 - Psest_0204 0.14 -0.0
204,292 - Psest_0204 0.14 +0.5
204,336 - Psest_0204 0.21 -0.6
204,468 + Psest_0204 0.40 -0.5
204,468 + Psest_0204 0.40 +0.5
204,469 - Psest_0204 0.40 -0.5
204,469 - Psest_0204 0.40 +1.5
204,469 - Psest_0204 0.40 -1.6
204,577 - Psest_0204 0.57 +3.5
204,736 - Psest_0204 0.80 -0.1
204,970 + -1.9
204,970 + -0.3
205,036 - -0.5
205,183 + Psest_0205 0.10 +0.1
205,183 + Psest_0205 0.10 -1.0
205,183 + Psest_0205 0.10 -1.5
205,184 - Psest_0205 0.11 -0.0
205,184 - Psest_0205 0.11 +1.5
205,696 + Psest_0205 0.51 +0.2
205,696 + Psest_0205 0.51 +1.5
205,697 - Psest_0205 0.51 +0.5
205,697 - Psest_0205 0.51 +0.5
205,729 + Psest_0205 0.54 +2.1
205,729 + Psest_0205 0.54 -1.5
205,730 - Psest_0205 0.54 +0.5
205,730 - Psest_0205 0.54 -0.9
205,733 - Psest_0205 0.54 +3.0
205,964 - Psest_0205 0.72 +1.1
205,969 + Psest_0205 0.73 -0.0
205,969 + Psest_0205 0.73 +1.0
205,969 + Psest_0205 0.73 -1.5
205,969 + Psest_0205 0.73 +1.0
205,969 + Psest_0205 0.73 -1.8
205,969 + Psest_0205 0.73 -0.8
205,969 + Psest_0205 0.73 -0.3
205,969 + Psest_0205 0.73 -0.4
205,969 + Psest_0205 0.73 -1.0
205,969 + Psest_0205 0.73 +1.0
205,969 + Psest_0205 0.73 +0.5
205,970 - Psest_0205 0.73 -0.5
205,970 - Psest_0205 0.73 +0.5
205,970 - Psest_0205 0.73 +0.5
205,970 - Psest_0205 0.73 -0.7
205,970 - Psest_0205 0.73 -0.0
205,970 - Psest_0205 0.73 +0.9
205,970 - Psest_0205 0.73 +0.9
205,970 - Psest_0205 0.73 -0.5
205,970 - Psest_0205 0.73 +0.6
205,970 - Psest_0205 0.73 +2.1
205,970 - Psest_0205 0.73 +2.0
205,970 - Psest_0205 0.73 +1.2
205,970 - Psest_0205 0.73 +0.7
206,110 + Psest_0205 0.84 +1.0
206,134 + Psest_0205 0.86 +0.5
206,134 + Psest_0205 0.86 +0.1
206,134 + Psest_0205 0.86 -0.5
206,135 - Psest_0205 0.86 +1.9
206,135 - Psest_0205 0.86 +0.3
206,135 - Psest_0205 0.86 +1.7
206,135 - Psest_0205 0.86 -0.0
206,185 + Psest_0205 0.90 +0.5
206,185 + Psest_0205 0.90 +0.7
206,186 - Psest_0205 0.90 +0.2
206,186 - Psest_0205 0.90 +0.2
206,186 - Psest_0205 0.90 -2.0
206,186 - Psest_0205 0.90 +0.7
206,293 + +0.1
206,294 - -1.0
206,294 - -2.2
206,294 - -1.8
206,294 - +0.5
206,533 + Psest_0206 0.20 -0.0
206,533 + Psest_0206 0.20 +0.4
206,533 + Psest_0206 0.20 +1.1
206,533 + Psest_0206 0.20 +0.1
206,533 + Psest_0206 0.20 +0.5
206,533 + Psest_0206 0.20 -0.5
206,533 + Psest_0206 0.20 +0.6
206,533 + Psest_0206 0.20 -2.4
206,533 + Psest_0206 0.20 -0.5
206,533 + Psest_0206 0.20 +0.1
206,534 - Psest_0206 0.20 -0.9
206,534 - Psest_0206 0.20 +1.1
206,534 - Psest_0206 0.20 -1.0
206,534 - Psest_0206 0.20 +0.5
206,534 - Psest_0206 0.20 +0.4
206,534 - Psest_0206 0.20 -0.2
206,534 - Psest_0206 0.20 -1.0
206,563 + Psest_0206 0.23 +0.2
206,563 + Psest_0206 0.23 -1.4
206,662 + Psest_0206 0.33 +1.8
206,662 + Psest_0206 0.33 -0.0
206,708 - Psest_0206 0.38 -0.0
206,888 - Psest_0206 0.56 -0.0
207,077 - Psest_0206 0.75 -1.0
207,109 + Psest_0206 0.79 +0.5
207,109 + Psest_0206 0.79 -0.9
207,109 + Psest_0206 0.79 -0.5
207,109 + Psest_0206 0.79 -1.2
207,109 + Psest_0206 0.79 +0.1
207,109 + Psest_0206 0.79 -2.9
207,109 + Psest_0206 0.79 -1.8
207,109 + Psest_0206 0.79 -0.0
207,109 + Psest_0206 0.79 +2.5
207,109 + Psest_0206 0.79 -0.8
207,109 + Psest_0206 0.79 +1.5
207,109 + Psest_0206 0.79 -0.6
207,110 - Psest_0206 0.79 +0.5
207,110 - Psest_0206 0.79 +1.9
207,110 - Psest_0206 0.79 -1.9
207,110 - Psest_0206 0.79 -0.6
207,110 - Psest_0206 0.79 -0.4
207,110 - Psest_0206 0.79 -0.0
207,110 - Psest_0206 0.79 -0.5
207,110 - Psest_0206 0.79 +1.0
207,110 - Psest_0206 0.79 +2.1
207,110 - Psest_0206 0.79 -1.2
207,110 - Psest_0206 0.79 -0.0
207,110 - Psest_0206 0.79 +1.5
207,110 - Psest_0206 0.79 -0.0
207,110 - Psest_0206 0.79 -0.8
207,277 + -1.0
207,277 + -0.6
207,277 + -0.6
207,277 + +0.5
207,277 + +0.2
207,277 + +1.9
207,278 - +1.5
207,278 - -0.6

Or see this region's nucleotide sequence