Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1829 and HP15_1830 are separated by 107 nucleotides HP15_1830 and HP15_1831 are separated by 314 nucleotides
HP15_1829: HP15_1829 - tRNA pseudouridine synthase A, at 1,925,814 to 1,926,722
_1829
HP15_1830: HP15_1830 - secreted protein containing motility protein FimV, at 1,926,830 to 1,930,078
_1830
HP15_1831: HP15_1831 - aspartate-semialdehyde dehydrogenase, at 1,930,393 to 1,931,475
_1831
Position (kb)
1926
1927
1928
1929
1930
1931 Strain fitness (log2 ratio)
-2
-1
0
1 at 1925.929 kb on - strand, within HP15_1829 at 1926.345 kb on - strand, within HP15_1829 at 1926.435 kb on + strand, within HP15_1829 at 1926.537 kb on + strand, within HP15_1829 at 1926.563 kb on - strand, within HP15_1829 at 1926.850 kb on + strand at 1926.857 kb on + strand at 1926.864 kb on + strand at 1926.918 kb on + strand at 1927.182 kb on + strand, within HP15_1830 at 1927.215 kb on - strand, within HP15_1830 at 1927.242 kb on + strand, within HP15_1830 at 1927.333 kb on + strand, within HP15_1830 at 1927.341 kb on - strand, within HP15_1830 at 1927.483 kb on + strand, within HP15_1830 at 1928.028 kb on + strand, within HP15_1830 at 1928.121 kb on + strand, within HP15_1830 at 1928.282 kb on - strand, within HP15_1830 at 1928.288 kb on - strand, within HP15_1830 at 1928.341 kb on + strand, within HP15_1830 at 1928.561 kb on - strand, within HP15_1830 at 1928.685 kb on - strand, within HP15_1830 at 1928.700 kb on + strand, within HP15_1830 at 1928.869 kb on + strand, within HP15_1830 at 1929.072 kb on + strand, within HP15_1830 at 1929.272 kb on - strand, within HP15_1830 at 1929.346 kb on + strand, within HP15_1830 at 1929.365 kb on + strand, within HP15_1830 at 1929.510 kb on - strand, within HP15_1830 at 1929.572 kb on - strand, within HP15_1830 at 1929.645 kb on + strand, within HP15_1830 at 1929.645 kb on - strand, within HP15_1830 at 1929.645 kb on - strand, within HP15_1830 at 1929.770 kb on + strand at 1929.786 kb on - strand at 1930.003 kb on + strand at 1930.003 kb on + strand at 1930.003 kb on + strand at 1930.005 kb on + strand at 1930.240 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 1,925,929 - HP15_1829 0.13 +0.7 1,926,345 - HP15_1829 0.58 +1.7 1,926,435 + HP15_1829 0.68 +1.4 1,926,537 + HP15_1829 0.80 +0.4 1,926,563 - HP15_1829 0.82 -0.1 1,926,850 + -0.2 1,926,857 + -0.1 1,926,864 + -0.3 1,926,918 + -0.6 1,927,182 + HP15_1830 0.11 -0.5 1,927,215 - HP15_1830 0.12 +0.2 1,927,242 + HP15_1830 0.13 +0.3 1,927,333 + HP15_1830 0.15 -0.2 1,927,341 - HP15_1830 0.16 +0.5 1,927,483 + HP15_1830 0.20 +0.2 1,928,028 + HP15_1830 0.37 +0.5 1,928,121 + HP15_1830 0.40 -0.6 1,928,282 - HP15_1830 0.45 -0.8 1,928,288 - HP15_1830 0.45 -0.9 1,928,341 + HP15_1830 0.47 -0.8 1,928,561 - HP15_1830 0.53 +1.4 1,928,685 - HP15_1830 0.57 -1.8 1,928,700 + HP15_1830 0.58 -0.4 1,928,869 + HP15_1830 0.63 -1.5 1,929,072 + HP15_1830 0.69 -1.1 1,929,272 - HP15_1830 0.75 +0.1 1,929,346 + HP15_1830 0.77 +0.2 1,929,365 + HP15_1830 0.78 -0.5 1,929,510 - HP15_1830 0.82 +0.7 1,929,572 - HP15_1830 0.84 +0.6 1,929,645 + HP15_1830 0.87 -0.5 1,929,645 - HP15_1830 0.87 -0.3 1,929,645 - HP15_1830 0.87 -0.8 1,929,770 + +0.1 1,929,786 - -0.7 1,930,003 + +0.9 1,930,003 + +0.4 1,930,003 + +0.6 1,930,005 + -0.5 1,930,240 + -0.9
Or see this region's nucleotide sequence