Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1669

Experiment: LB 30C timecourse2 timepoint 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1667 and Psest_1668 overlap by 8 nucleotidesPsest_1668 and Psest_1669 overlap by 4 nucleotidesPsest_1669 and Psest_1670 are separated by 5 nucleotidesPsest_1670 and Psest_1671 are separated by 148 nucleotides Psest_1667: Psest_1667 - lipoprotein releasing system, transmembrane protein, LolC/E family, at 1,775,394 to 1,776,641 _1667 Psest_1668: Psest_1668 - lipoprotein releasing system, ATP-binding protein, at 1,776,634 to 1,777,344 _1668 Psest_1669: Psest_1669 - lipoprotein releasing system, transmembrane protein, LolC/E family, at 1,777,341 to 1,778,588 _1669 Psest_1670: Psest_1670 - Uncharacterized protein conserved in bacteria, at 1,778,594 to 1,779,109 _1670 Psest_1671: Psest_1671 - DNA internalization-related competence protein ComEC/Rec2, at 1,779,258 to 1,781,483 _1671 Position (kb) 1777 1778 1779Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1778.586 kb on + strandat 1778.586 kb on + strandat 1779.174 kb on - strandat 1779.174 kb on - strandat 1779.188 kb on - strandat 1779.188 kb on - strandat 1779.188 kb on - strandat 1779.188 kb on - strandat 1779.188 kb on - strandat 1779.188 kb on - strandat 1779.188 kb on - strandat 1779.188 kb on - strandat 1779.188 kb on - strandat 1779.356 kb on - strandat 1779.371 kb on + strandat 1779.371 kb on + strandat 1779.587 kb on + strand, within Psest_1671

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 30C timecourse2 timepoint 2
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1,778,586 + -0.1
1,778,586 + -0.1
1,779,174 - +0.6
1,779,174 - -1.7
1,779,188 - +2.3
1,779,188 - -0.7
1,779,188 - -1.1
1,779,188 - +0.2
1,779,188 - +0.0
1,779,188 - -3.5
1,779,188 - -1.5
1,779,188 - -1.5
1,779,188 - -0.7
1,779,356 - -0.2
1,779,371 + -1.8
1,779,371 + +0.2
1,779,587 + Psest_1671 0.15 -2.6

Or see this region's nucleotide sequence