Experiment: LB 30C timecourse2 timepoint 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1667 and Psest_1668 overlap by 8 nucleotides Psest_1668 and Psest_1669 overlap by 4 nucleotides Psest_1669 and Psest_1670 are separated by 5 nucleotides Psest_1670 and Psest_1671 are separated by 148 nucleotides
Psest_1667: Psest_1667 - lipoprotein releasing system, transmembrane protein, LolC/E family, at 1,775,394 to 1,776,641
_1667
Psest_1668: Psest_1668 - lipoprotein releasing system, ATP-binding protein, at 1,776,634 to 1,777,344
_1668
Psest_1669: Psest_1669 - lipoprotein releasing system, transmembrane protein, LolC/E family, at 1,777,341 to 1,778,588
_1669
Psest_1670: Psest_1670 - Uncharacterized protein conserved in bacteria, at 1,778,594 to 1,779,109
_1670
Psest_1671: Psest_1671 - DNA internalization-related competence protein ComEC/Rec2, at 1,779,258 to 1,781,483
_1671
Position (kb)
1777
1778
1779 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1778.586 kb on + strand at 1778.586 kb on + strand at 1779.174 kb on - strand at 1779.174 kb on - strand at 1779.188 kb on - strand at 1779.188 kb on - strand at 1779.188 kb on - strand at 1779.188 kb on - strand at 1779.188 kb on - strand at 1779.188 kb on - strand at 1779.188 kb on - strand at 1779.188 kb on - strand at 1779.188 kb on - strand at 1779.356 kb on - strand at 1779.371 kb on + strand at 1779.371 kb on + strand at 1779.587 kb on + strand, within Psest_1671
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse2 timepoint 2 remove 1,778,586 + -0.1 1,778,586 + -0.1 1,779,174 - +0.6 1,779,174 - -1.7 1,779,188 - +2.3 1,779,188 - -0.7 1,779,188 - -1.1 1,779,188 - +0.2 1,779,188 - +0.0 1,779,188 - -3.5 1,779,188 - -1.5 1,779,188 - -1.5 1,779,188 - -0.7 1,779,356 - -0.2 1,779,371 + -1.8 1,779,371 + +0.2 1,779,587 + Psest_1671 0.15 -2.6
Or see this region's nucleotide sequence