Strain Fitness in Marinobacter adhaerens HP15 around HP15_1

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1 and HP15_2 are separated by 123 nucleotides HP15_1: HP15_1 - hypothetical protein, at 261 to 1,085 _1 HP15_2: HP15_2 - acyl-CoA dehydrogenase domain protein, at 1,209 to 2,378 _2 Position (kb) 0 1 2Strain fitness (log2 ratio) -1 0 1at 0.433 kb on + strand, within HP15_1at 0.446 kb on - strand, within HP15_1at 0.479 kb on - strand, within HP15_1at 0.497 kb on - strand, within HP15_1at 1.161 kb on + strandat 1.191 kb on - strandat 1.202 kb on - strandat 1.477 kb on + strand, within HP15_2at 1.658 kb on + strand, within HP15_2

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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433 + HP15_1 0.21 -0.5
446 - HP15_1 0.22 -1.5
479 - HP15_1 0.26 -0.9
497 - HP15_1 0.29 -0.3
1,161 + -0.1
1,191 - +0.2
1,202 - -0.4
1,477 + HP15_2 0.23 -0.2
1,658 + HP15_2 0.38 -0.0

Or see this region's nucleotide sequence