Strain Fitness in Shewanella amazonensis SB2B around Sama_3299

Experiment: Minimal media, 25C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Minimal media, 25C
3,924,508	-		Sama_3298	0.82	-0.8
3,924,575	-		Sama_3298	0.84	+0.2
3,924,681	-		Sama_3298	0.86	-0.4
3,924,753	-		Sama_3298	0.88	+0.3
3,924,830	+		Sama_3298	0.90	+0.7
3,924,830	+		Sama_3298	0.90	+1.6
3,924,831	-		Sama_3298	0.90	+1.0
3,924,831	-		Sama_3298	0.90	+0.8
3,924,851	-				+0.0
3,925,017	+				-0.3
3,925,017	+				+0.1
3,925,017	+				-0.1
3,925,278	-				+0.1
3,925,286	+				+0.4
3,925,286	+				+0.6
3,925,286	+				+0.3
3,925,287	-				-0.7
3,925,287	-				+0.4
3,925,287	-				-0.1
3,925,320	+				+1.0
3,925,320	+				+0.3
3,925,320	+				-0.1
3,925,321	-				+0.7
3,925,354	+				+0.5
3,925,354	+				-0.7
3,925,354	+				-0.4
3,925,354	+				-0.8
3,925,354	+				+0.2
3,925,354	+				-0.7
3,925,354	+				-0.1
3,925,354	+				+0.0
3,925,354	+				-0.3
3,925,354	+				-0.6
3,925,355	-				-1.7
3,925,355	-				+0.0
3,925,355	-				-0.2
3,925,355	-				-1.1
3,925,355	-				-1.3
3,925,355	-				+0.0
3,925,355	-				-0.2
3,925,355	-				-0.7
3,925,355	-				-0.0
3,925,441	+				+0.1
3,925,442	-				+0.2
3,925,442	-				-0.3
3,925,442	-				+0.3
3,925,494	+				-1.5
3,925,494	+				+0.2
3,925,495	-				+0.1
3,925,497	+				-0.6
3,925,497	+				-0.1
3,925,497	+				-1.0
3,925,498	-				-2.3
3,925,498	-				+0.6
3,925,498	-				-0.1
3,925,498	-				-0.1
3,925,498	-				+0.9
3,925,500	+				-0.1
3,925,500	+				+0.0
3,925,500	+				-0.0
3,925,500	+				+1.0
3,925,500	+				-1.2
3,925,500	+				-0.6
3,925,501	-				+0.3
3,925,523	+				-3.1
3,925,567	+				-3.2
3,925,569	+				-2.7
3,925,569	+				-1.8
3,925,569	+				-2.3
3,925,569	+				-2.1
3,925,569	+				-3.0
3,925,569	+				-3.1
3,925,569	+				-2.5
3,925,570	-				-2.7
3,925,570	-				-3.5
3,925,570	-				-2.0
3,925,570	-				-2.1
3,925,570	-				-1.8
3,925,570	-				-1.5
3,925,570	-				-3.2
3,925,578	+				-0.9
3,925,578	+				-2.4
3,925,578	+				-2.1
3,925,578	+				-2.1
3,925,579	-				-3.1
3,925,579	-				-2.7
3,925,579	-				-1.6
3,925,579	-				-3.7
3,925,579	-				-1.4
3,925,579	-				-3.1
3,925,579	-				-2.3
3,925,579	-				-2.7
3,925,579	-				-1.3
3,925,579	-				-2.1
3,925,579	-				-3.8
3,925,647	+		Sama_3299	0.14	-1.8
3,925,647	+		Sama_3299	0.14	-2.8
3,925,647	+		Sama_3299	0.14	-0.4
3,925,647	+		Sama_3299	0.14	-2.3
3,925,648	-		Sama_3299	0.14	-3.5
3,925,648	-		Sama_3299	0.14	-2.4
3,925,648	-		Sama_3299	0.14	-2.1
3,925,648	-		Sama_3299	0.14	-3.1
3,925,648	-		Sama_3299	0.14	-2.4
3,925,648	-		Sama_3299	0.14	-3.0
3,925,697	+		Sama_3299	0.18	-1.0
3,925,742	+		Sama_3299	0.22	-3.0
3,925,742	+		Sama_3299	0.22	-4.6
3,925,742	+		Sama_3299	0.22	-1.9
3,925,743	-		Sama_3299	0.22	+0.0
3,925,804	+		Sama_3299	0.28	-3.2
3,925,804	+		Sama_3299	0.28	-2.2
3,925,804	+		Sama_3299	0.28	-1.8
3,925,805	-		Sama_3299	0.28	-2.4
3,925,805	-		Sama_3299	0.28	-2.3
3,925,805	-		Sama_3299	0.28	-2.3
3,925,805	-		Sama_3299	0.28	+0.0
3,925,805	-		Sama_3299	0.28	-2.1
3,925,840	+		Sama_3299	0.31	-3.1
3,925,841	-		Sama_3299	0.31	-2.8
3,925,858	+		Sama_3299	0.33	-3.3
3,925,899	+		Sama_3299	0.37	-1.7
3,925,899	+		Sama_3299	0.37	-3.1
3,925,899	+		Sama_3299	0.37	-1.4
3,925,899	+		Sama_3299	0.37	-3.4
3,925,899	+		Sama_3299	0.37	-2.1
3,925,899	+		Sama_3299	0.37	-3.0
3,925,899	+		Sama_3299	0.37	-1.0
3,925,900	-		Sama_3299	0.37	-4.5
3,925,900	-		Sama_3299	0.37	-3.7
3,925,920	+		Sama_3299	0.39	-1.7
3,925,920	+		Sama_3299	0.39	-1.6
3,925,920	+		Sama_3299	0.39	-4.4
3,925,920	+		Sama_3299	0.39	-2.1
3,925,921	-		Sama_3299	0.39	+0.3
3,925,980	+		Sama_3299	0.44	-3.7
3,925,980	+		Sama_3299	0.44	-1.6
3,925,980	+		Sama_3299	0.44	-3.9
3,925,980	+		Sama_3299	0.44	-0.6
3,925,980	+		Sama_3299	0.44	-3.7
3,925,980	+		Sama_3299	0.44	-2.0
3,925,980	+		Sama_3299	0.44	-2.6
3,925,981	-		Sama_3299	0.44	-2.5
3,925,981	-		Sama_3299	0.44	-3.6
3,925,981	-		Sama_3299	0.44	-1.4
3,925,981	-		Sama_3299	0.44	-1.5
3,925,981	-		Sama_3299	0.44	-3.6
3,926,076	+		Sama_3299	0.53	-1.4
3,926,076	+		Sama_3299	0.53	-1.1
3,926,076	+		Sama_3299	0.53	-2.5
3,926,076	+		Sama_3299	0.53	-1.3
3,926,077	-		Sama_3299	0.53	-2.8
3,926,077	-		Sama_3299	0.53	-2.9
3,926,079	+		Sama_3299	0.53	-3.8
3,926,079	+		Sama_3299	0.53	-1.0
3,926,079	+		Sama_3299	0.53	-1.3
3,926,079	+		Sama_3299	0.53	-3.1
3,926,079	+		Sama_3299	0.53	-1.1
3,926,080	-		Sama_3299	0.53	-3.1
3,926,080	-		Sama_3299	0.53	-2.8
3,926,080	-		Sama_3299	0.53	-3.8
3,926,080	-		Sama_3299	0.53	-2.8
3,926,080	-		Sama_3299	0.53	-3.4
3,926,099	+		Sama_3299	0.55	-2.1
3,926,100	-		Sama_3299	0.55	-1.8
3,926,115	+		Sama_3299	0.57	-2.1
3,926,115	+		Sama_3299	0.57	-3.4
3,926,116	-		Sama_3299	0.57	-1.6
3,926,116	-		Sama_3299	0.57	-1.6
3,926,116	-		Sama_3299	0.57	-2.9
3,926,116	-		Sama_3299	0.57	-1.8
3,926,116	-		Sama_3299	0.57	-2.8
3,926,159	+		Sama_3299	0.61	-1.8
3,926,159	+		Sama_3299	0.61	-0.3
3,926,159	+		Sama_3299	0.61	-2.0
3,926,159	+		Sama_3299	0.61	-2.5
3,926,159	+		Sama_3299	0.61	-2.8
3,926,159	+		Sama_3299	0.61	-3.6
3,926,160	-		Sama_3299	0.61	-4.5
3,926,160	-		Sama_3299	0.61	-1.8
3,926,160	-		Sama_3299	0.61	-1.7
3,926,173	+		Sama_3299	0.62	-2.2
3,926,175	+		Sama_3299	0.62	+0.0
3,926,175	+		Sama_3299	0.62	-3.0
3,926,175	+		Sama_3299	0.62	-1.0
3,926,175	+		Sama_3299	0.62	-1.5
3,926,175	+		Sama_3299	0.62	-2.6
3,926,175	+		Sama_3299	0.62	-2.2
3,926,176	-		Sama_3299	0.62	-2.0
3,926,176	-		Sama_3299	0.62	-2.3
3,926,176	-		Sama_3299	0.62	-3.0
3,926,176	-		Sama_3299	0.62	-1.8
3,926,176	-		Sama_3299	0.62	-1.8
3,926,176	-		Sama_3299	0.62	-2.1
3,926,272	+		Sama_3299	0.71	-2.4
3,926,273	-		Sama_3299	0.71	-1.8
3,926,332	-		Sama_3299	0.77	-1.8
3,926,353	+		Sama_3299	0.79	-4.1
3,926,353	+		Sama_3299	0.79	-2.2
3,926,353	+		Sama_3299	0.79	-3.4
3,926,353	+		Sama_3299	0.79	-1.6
3,926,353	+		Sama_3299	0.79	-2.5
3,926,353	+		Sama_3299	0.79	-2.3
3,926,353	+		Sama_3299	0.79	-2.7
3,926,354	-		Sama_3299	0.79	-3.4
3,926,354	-		Sama_3299	0.79	-2.5
3,926,354	-		Sama_3299	0.79	-1.6
3,926,377	+		Sama_3299	0.81	-2.0
3,926,388	+		Sama_3299	0.82	-3.1
3,926,388	+		Sama_3299	0.82	-3.2
3,926,469	+		Sama_3299	0.89	-3.8
3,926,470	-		Sama_3299	0.89	-5.2
3,926,470	-		Sama_3299	0.89	-1.1
3,926,470	-		Sama_3299	0.89	-1.8
3,926,470	-		Sama_3299	0.89	-3.1
3,926,479	+				-2.1
3,926,480	-				-1.6
3,926,480	-				-1.9
3,926,480	-				-1.4
3,926,480	-				-2.0
3,926,480	-				-1.9
3,926,485	+				-2.4
3,926,485	+				-1.8
3,926,485	+				-2.3
3,926,485	+				-3.3
3,926,485	+				-1.0
3,926,485	+				-3.1
3,926,485	+				-3.6
3,926,485	+				-3.6
3,926,485	+				-1.4
3,926,485	+				-0.4
3,926,485	+				-2.0
3,926,486	-				-1.8
3,926,486	-				-2.1
3,926,486	-				-2.7
3,926,486	-				-3.3
3,926,486	-				-2.9
3,926,486	-				-1.1
3,926,486	-				-2.3
3,926,486	-				-2.8
3,926,486	-				+0.4
3,926,486	-				-2.7
3,926,486	-				-2.5
3,926,486	-				-1.3
3,926,486	-				-2.4
3,926,486	-				-3.1
3,926,486	-				-2.4
3,926,497	+				-1.1
3,926,497	+				-1.3
3,926,497	+				-2.0
3,926,498	-				-3.1
3,926,498	-				-3.9
3,926,498	-				-2.4
3,926,498	-				-3.1
3,926,498	-				-3.3
3,926,565	-				-1.9
3,926,565	-				-2.9
3,926,571	+				-1.7
3,926,571	+				-2.7
3,926,572	-				-3.0
3,926,572	-				-2.4
3,926,572	-				-2.9
3,926,576	+				-2.1
3,926,576	+				-3.3
3,926,576	+				-3.4
3,926,576	+				-1.8
3,926,576	+				-3.6
3,926,576	+				-3.5
3,926,576	+				-2.9
3,926,576	+				-0.7
3,926,576	+				-3.8
3,926,576	+				-2.7
3,926,577	-				-2.1
3,926,577	-				-2.7
3,926,577	-				-2.6
3,926,577	-				-2.1
3,926,577	-				-1.3
3,926,577	-				-2.7
3,926,577	-				-2.1
3,926,577	-				-3.0
3,926,577	-				-3.4
3,926,577	-				-0.6
3,926,578	+				-1.8
3,926,578	+				-3.9
3,926,589	+				-3.6
3,926,590	-				-0.8
3,926,617	+				-3.1
3,926,618	-				-0.6
3,926,633	+				-2.0
3,926,633	+				-3.8
3,926,634	-				+0.3
3,926,642	+				-0.2
3,926,643	-				-0.3
3,926,673	+				-0.7
3,926,673	+				-0.2
3,926,791	+				+2.6
3,926,791	+				-1.0
3,926,846	+		Sama_3300	0.13	-0.6
3,926,846	+		Sama_3300	0.13	+1.7
3,926,979	+		Sama_3300	0.24	+0.7
3,926,980	-		Sama_3300	0.25	+0.1
3,926,980	-		Sama_3300	0.25	+0.5
3,926,980	-		Sama_3300	0.25	-0.4
3,926,980	-		Sama_3300	0.25	+0.3
3,926,980	-		Sama_3300	0.25	+0.1
3,927,017	+		Sama_3300	0.28	+0.2
3,927,017	+		Sama_3300	0.28	+0.4
3,927,017	+		Sama_3300	0.28	-0.1
3,927,019	-		Sama_3300	0.28	+0.1
3,927,065	+		Sama_3300	0.32	+0.0
3,927,065	+		Sama_3300	0.32	+0.0
3,927,065	+		Sama_3300	0.32	+0.4
3,927,065	+		Sama_3300	0.32	-0.1
3,927,066	-		Sama_3300	0.32	-0.0
3,927,066	-		Sama_3300	0.32	-0.6
3,927,066	-		Sama_3300	0.32	-0.1
3,927,066	-		Sama_3300	0.32	-0.3
3,927,120	-		Sama_3300	0.36	+0.3
3,927,120	-		Sama_3300	0.36	-0.1
3,927,127	+		Sama_3300	0.37	+0.5
3,927,127	+		Sama_3300	0.37	-0.2
3,927,128	-		Sama_3300	0.37	-0.5
3,927,128	-		Sama_3300	0.37	-0.2
3,927,233	+		Sama_3300	0.46	-0.7
3,927,234	-		Sama_3300	0.46	+0.1
3,927,261	+		Sama_3300	0.49	+0.1
3,927,261	+		Sama_3300	0.49	-0.6
3,927,261	+		Sama_3300	0.49	-2.1
3,927,262	-		Sama_3300	0.49	-0.1
3,927,295	+		Sama_3300	0.51	-0.4
3,927,295	+		Sama_3300	0.51	+1.7
3,927,296	-		Sama_3300	0.52	-0.6
3,927,301	+		Sama_3300	0.52	-0.4
3,927,318	+		Sama_3300	0.53	+0.4
3,927,318	+		Sama_3300	0.53	+0.3
3,927,318	+		Sama_3300	0.53	+0.8
3,927,318	+		Sama_3300	0.53	-0.3
3,927,318	+		Sama_3300	0.53	-1.6
3,927,319	-		Sama_3300	0.54	-0.2
3,927,319	-		Sama_3300	0.54	+0.3
3,927,319	-		Sama_3300	0.54	+0.0
3,927,319	-		Sama_3300	0.54	-0.1
3,927,400	+		Sama_3300	0.60	+0.7
3,927,400	+		Sama_3300	0.60	+0.7
3,927,400	+		Sama_3300	0.60	+1.1
3,927,401	-		Sama_3300	0.61	-0.6
3,927,401	-		Sama_3300	0.61	+0.3
3,927,403	+		Sama_3300	0.61	-0.4
3,927,403	+		Sama_3300	0.61	+0.4
3,927,404	-		Sama_3300	0.61	+0.3
3,927,404	-		Sama_3300	0.61	+0.9
3,927,404	-		Sama_3300	0.61	+0.7
3,927,404	-		Sama_3300	0.61	+0.3
3,927,405	-		Sama_3300	0.61	+1.0
3,927,579	+		Sama_3300	0.76	+0.3
3,927,579	+		Sama_3300	0.76	+0.1
3,927,580	-		Sama_3300	0.76	+1.2