Strain Fitness in Shewanella amazonensis SB2B around Sama_2634

Experiment: Minimal media, 25C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Minimal media, 25C
3,152,862	+		Sama_2632	0.50	+0.1
3,152,920	+		Sama_2632	0.59	+1.3
3,152,939	-		Sama_2632	0.62	-0.6
3,152,939	-		Sama_2632	0.62	-0.1
3,152,939	-		Sama_2632	0.62	+0.3
3,152,976	-		Sama_2632	0.68	+0.5
3,153,039	-		Sama_2632	0.78	+0.6
3,153,058	+		Sama_2632	0.81	+0.6
3,153,128	+				+0.6
3,153,129	-				-0.3
3,153,132	+				+1.5
3,153,133	-				-0.1
3,153,170	+				-0.1
3,153,170	+				+0.6
3,153,170	+				-0.2
3,153,171	-				+0.6
3,153,222	-				-0.7
3,153,222	-				-0.3
3,153,251	+				+0.6
3,153,281	+		Sama_2633	0.17	+0.6
3,153,282	-		Sama_2633	0.17	-0.6
3,153,282	-		Sama_2633	0.17	-0.1
3,153,290	-		Sama_2633	0.19	-0.4
3,153,290	-		Sama_2633	0.19	-0.1
3,153,290	-		Sama_2633	0.19	-0.6
3,153,290	-		Sama_2633	0.19	+0.0
3,153,310	-		Sama_2633	0.25	+0.0
3,153,318	+		Sama_2633	0.28	-0.5
3,153,355	-		Sama_2633	0.38	-0.4
3,153,411	-		Sama_2633	0.54	+0.0
3,153,411	-		Sama_2633	0.54	+0.3
3,153,421	-		Sama_2633	0.57	+0.0
3,153,421	-		Sama_2633	0.57	-0.2
3,153,500	+		Sama_2633	0.80	-0.6
3,153,557	+				-0.2
3,153,557	+				+0.6
3,153,557	+				+0.6
3,153,557	+				-0.6
3,153,558	-				-1.3
3,153,558	-				+0.7
3,153,558	-				+0.5
3,153,558	-				-0.6
3,153,558	-				+0.3
3,153,558	-				-0.6
3,153,558	-				+0.6
3,153,558	-				-1.0
3,153,561	-				-2.0
3,153,561	-				+0.4
3,153,561	-				-0.3
3,153,579	-				+0.5
3,153,639	+				+1.1
3,153,640	-				+1.3
3,153,647	+				+0.0
3,153,664	-				-0.5
3,153,668	+				-0.7
3,153,668	+				-0.4
3,153,669	-				+0.6
3,153,725	+				+0.9
3,153,725	+				+0.4
3,153,737	+				+1.6
3,153,737	+				-0.6
3,153,737	+				-0.8
3,153,738	-				+1.0
3,153,739	+				+0.1
3,153,739	+				+0.8
3,153,739	+				+0.4
3,153,739	+				+2.6
3,153,739	+				-0.1
3,153,740	-				-1.0
3,153,740	-				-2.7
3,153,740	-				+0.8
3,153,740	-				-1.0
3,153,740	-				-0.2
3,153,740	-				-1.3
3,153,740	-				+0.3
3,153,740	-				+0.6
3,153,749	-				-0.4
3,153,798	+				+0.1
3,153,798	+				+0.8
3,153,799	-				-0.4
3,153,799	-				-0.1
3,153,799	-				-0.0
3,153,799	-				-0.1
3,153,802	+				-0.6
3,153,802	+				-0.0
3,153,802	+				+0.0
3,153,803	-				-1.1
3,153,882	+				-0.5
3,153,882	+				+1.0
3,153,882	+				-0.6
3,153,882	+				+0.4
3,153,882	+				-0.8
3,153,882	+				+0.3
3,153,883	-				-0.1
3,153,883	-				+0.2
3,153,883	-				-0.4
3,153,890	+				-0.8
3,153,969	+		Sama_2634	0.10	+0.8
3,153,970	-		Sama_2634	0.11	-0.0
3,153,997	+		Sama_2634	0.12	-0.1
3,153,998	-		Sama_2634	0.12	-0.4
3,154,093	-		Sama_2634	0.17	-0.8
3,154,093	-		Sama_2634	0.17	+0.0
3,154,122	+		Sama_2634	0.19	+0.7
3,154,122	+		Sama_2634	0.19	+0.6
3,154,122	+		Sama_2634	0.19	+0.3
3,154,123	-		Sama_2634	0.19	+0.6
3,154,123	-		Sama_2634	0.19	+0.1
3,154,123	-		Sama_2634	0.19	+0.2
3,154,123	-		Sama_2634	0.19	-0.2
3,154,123	-		Sama_2634	0.19	-0.1
3,154,123	-		Sama_2634	0.19	-0.1
3,154,123	-		Sama_2634	0.19	+0.2
3,154,150	-		Sama_2634	0.20	-0.6
3,154,220	-		Sama_2634	0.24	-0.6
3,154,316	+		Sama_2634	0.29	+0.0
3,154,317	-		Sama_2634	0.29	+0.2
3,154,409	+		Sama_2634	0.34	+0.0
3,154,409	+		Sama_2634	0.34	+1.1
3,154,409	+		Sama_2634	0.34	+0.5
3,154,410	-		Sama_2634	0.34	-1.4
3,154,410	-		Sama_2634	0.34	-1.3
3,154,410	-		Sama_2634	0.34	+0.3
3,154,410	-		Sama_2634	0.34	+0.1
3,154,422	+		Sama_2634	0.35	+0.2
3,154,422	+		Sama_2634	0.35	-0.5
3,154,437	+		Sama_2634	0.36	-0.2
3,154,437	+		Sama_2634	0.36	-0.8
3,154,438	-		Sama_2634	0.36	-0.4
3,154,650	+		Sama_2634	0.47	-0.6
3,154,650	+		Sama_2634	0.47	-0.6
3,154,650	+		Sama_2634	0.47	+0.2
3,154,650	+		Sama_2634	0.47	-1.0
3,154,666	-		Sama_2634	0.48	+0.1
3,154,715	+		Sama_2634	0.51	-0.6
3,154,715	+		Sama_2634	0.51	-0.2
3,154,716	-		Sama_2634	0.51	+0.3
3,154,746	+		Sama_2634	0.52	+0.9
3,154,746	+		Sama_2634	0.52	+0.0
3,154,747	-		Sama_2634	0.53	+0.5
3,154,747	-		Sama_2634	0.53	-0.2
3,154,747	-		Sama_2634	0.53	-0.4
3,154,747	-		Sama_2634	0.53	-0.5
3,154,749	+		Sama_2634	0.53	+0.2
3,154,750	-		Sama_2634	0.53	+1.2
3,154,750	-		Sama_2634	0.53	+1.1
3,154,774	+		Sama_2634	0.54	+0.4
3,154,807	+		Sama_2634	0.56	-0.8
3,154,807	+		Sama_2634	0.56	-0.0
3,154,807	+		Sama_2634	0.56	-0.2
3,154,807	+		Sama_2634	0.56	-1.0
3,154,807	+		Sama_2634	0.56	+0.2
3,154,808	-		Sama_2634	0.56	-0.4
3,154,808	-		Sama_2634	0.56	-0.1
3,154,808	-		Sama_2634	0.56	-0.4
3,154,808	-		Sama_2634	0.56	+0.0
3,154,808	-		Sama_2634	0.56	+0.1
3,154,808	-		Sama_2634	0.56	-0.6
3,154,812	+		Sama_2634	0.56	-0.3
3,154,812	+		Sama_2634	0.56	-0.4
3,154,812	+		Sama_2634	0.56	+0.3
3,154,813	-		Sama_2634	0.56	+1.0
3,154,813	-		Sama_2634	0.56	+0.2
3,154,813	-		Sama_2634	0.56	-0.4
3,154,813	-		Sama_2634	0.56	-0.4
3,154,820	+		Sama_2634	0.56	-1.3
3,154,915	-		Sama_2634	0.62	-0.6
3,154,944	+		Sama_2634	0.63	-0.4
3,154,944	+		Sama_2634	0.63	+0.0
3,154,944	+		Sama_2634	0.63	+0.5
3,154,944	+		Sama_2634	0.63	+1.9
3,154,945	-		Sama_2634	0.63	-0.3
3,154,945	-		Sama_2634	0.63	-1.0
3,154,945	-		Sama_2634	0.63	+0.2
3,155,040	+		Sama_2634	0.68	+1.6
3,155,089	-		Sama_2634	0.71	-0.6
3,155,089	-		Sama_2634	0.71	-0.5
3,155,089	-		Sama_2634	0.71	+0.2
3,155,133	+		Sama_2634	0.73	-0.5
3,155,133	+		Sama_2634	0.73	+0.0
3,155,211	-		Sama_2634	0.78	+0.1
3,155,232	+		Sama_2634	0.79	+0.7
3,155,233	-		Sama_2634	0.79	+0.1
3,155,233	-		Sama_2634	0.79	+0.3
3,155,233	-		Sama_2634	0.79	+1.2
3,155,233	-		Sama_2634	0.79	+0.8
3,155,233	-		Sama_2634	0.79	-0.8
3,155,233	-		Sama_2634	0.79	-0.4
3,155,233	-		Sama_2634	0.79	-0.1
3,155,331	-		Sama_2634	0.84	-0.4
3,155,331	-		Sama_2634	0.84	+0.6
3,155,375	+		Sama_2634	0.86	+0.0
3,155,375	+		Sama_2634	0.86	-0.8
3,155,376	-		Sama_2634	0.86	-1.4
3,155,376	-		Sama_2634	0.86	-1.7
3,155,484	+				-0.0
3,155,484	+				+0.3
3,155,485	-				-0.2
3,155,485	-				-0.3
3,155,589	-				+0.3
3,155,623	+				+0.5
3,155,624	-				-0.1
3,155,624	-				+1.0
3,155,634	-				-1.0
3,155,637	+				-1.3
3,155,638	-				-0.3
3,155,651	+				+0.1
3,155,651	+				-0.4
3,155,651	+				+0.0
3,155,652	-				-0.2
3,155,652	-				+0.6
3,155,652	-				+0.5
3,155,664	+				+0.7
3,155,664	+				+3.8
3,155,673	+				-0.3
3,155,674	-				+0.1
3,155,679	+				-0.1
3,155,679	+				-1.4
3,155,679	+				+1.6
3,155,680	-				-0.4
3,155,680	-				-0.7
3,155,975	+		Sama_2635	0.14	+0.4
3,156,018	-		Sama_2635	0.16	+0.1
3,156,029	+		Sama_2635	0.16	+0.5
3,156,029	+		Sama_2635	0.16	+0.5
3,156,030	-		Sama_2635	0.16	-0.2
3,156,030	-		Sama_2635	0.16	-0.9
3,156,030	-		Sama_2635	0.16	-0.4
3,156,030	-		Sama_2635	0.16	-0.4
3,156,030	-		Sama_2635	0.16	+0.5
3,156,186	+		Sama_2635	0.24	-0.4
3,156,187	-		Sama_2635	0.24	+0.3
3,156,197	+		Sama_2635	0.24	+0.9
3,156,231	+		Sama_2635	0.26	-0.4
3,156,232	-		Sama_2635	0.26	-0.1
3,156,232	-		Sama_2635	0.26	-0.3
3,156,424	+		Sama_2635	0.35	+0.1
3,156,424	+		Sama_2635	0.35	-0.5
3,156,425	-		Sama_2635	0.35	-1.1
3,156,425	-		Sama_2635	0.35	+1.4
3,156,521	+		Sama_2635	0.40	+0.2
3,156,521	+		Sama_2635	0.40	+0.4
3,156,521	+		Sama_2635	0.40	+0.2
3,156,522	-		Sama_2635	0.40	+0.2
3,156,522	-		Sama_2635	0.40	-0.2
3,156,522	-		Sama_2635	0.40	+0.7
3,156,522	-		Sama_2635	0.40	-0.0
3,156,551	+		Sama_2635	0.41	-0.4
3,156,551	+		Sama_2635	0.41	-0.8
3,156,551	+		Sama_2635	0.41	-0.6
3,156,551	+		Sama_2635	0.41	-0.2
3,156,552	-		Sama_2635	0.41	-0.6
3,156,552	-		Sama_2635	0.41	-1.0
3,156,609	+		Sama_2635	0.44	+0.1